HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2647017 chr6:32663772 HLA-DQB1 [+27612bp] C - 12 T vs. G 0.075 (G) 0.175 (G) >1 (-) 0 (-) >0.05
rs2856669 chr6:32663360 HLA-DQB1 [+27200bp] C - 12 A vs. G 0.075 (A) 0.175 (A) <1 (-) 0 (-) >0.05
rs2858315 chr6:32662724 HLA-DQB1 [+26564bp] C - 12 A vs. C 0.075 (C) 0.175 (C) >1 (-) 0 (-) >0.05
rs9276549 chr6:32722242 HLA-DQB2 [-1633bp] C - 12 T vs. C 0.067 (T) - <1 (-) 8 (-) >0.05
chr6:32732126 chr6:32732126 HLA-DQB2 [+815bp] C - 11 T vs. C - - <1 (-) 0 (-) >0.05
rs149703773 chr6:32697478 HLA-DQA2 [-11641bp] C - 3 A vs. G - - >1 (-) 42 (-) >0.05
rs2647015 chr6:32664093 HLA-DQB1 [+27933bp] C - 12 T vs. G 0.075 (G) 0.175 (G) >1 (-) 0 (-) >0.05
rs79951097 chr6:32662954 HLA-DQB1 [+26794bp] C - 11 T vs. C 0.008 (C) 0.117 (C) <1 (-) 0 (-) >0.05
rs9275704 chr6:32688133 HLA-DQA2 [-20986bp] C - 10 C vs. G 0.15 (G) 0.033 (G) >1 (-) 0 (-) >0.05
rs9276442 chr6:32714901 HLA-DQA2 C - 11 T vs. C 0.083 (T) - <1 (-) 18 (-) >0.05
rs9275747 chr6:32689026 HLA-DQA2 [-20093bp] C - 11 T vs. G 0.433 (T) 0.175 (T) <1 (-) 11 (-) >0.05
rs114730461 chr6:32672935 HLA-DQA2 [-36184bp] C - 6 A vs. C - - >1 (-) 0 (-) >0.05
rs9275746 chr6:32689025 HLA-DQA2 [-20094bp] C - 11 T vs. C 0.442 (T) 0.175 (T) <1 (-) 10 (-) >0.05
rs149548865 chr6:32733511 HLA-DQB2 [+2200bp] C - 12 A vs. T - - >1 (-) 0 (-) >0.05
rs9275695 chr6:32687874 HLA-DQA2 [-21245bp] C - 11 A vs. G - - <1 (-) 1 (-) >0.05
rs9275669 chr6:32686676 HLA-DQA2 [-22443bp] C - 11 A vs. G 0.2 (A) - >1 (-) 0 (-) >0.05
rs2858313 chr6:32663919 HLA-DQB1 [+27759bp] C - 12 A vs. G 0.075 (G) 0.183 (G) >1 (-) 0 (-) >0.05
rs17840184 chr6:32733390 HLA-DQB2 [+2079bp] C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs141748883 chr6:32663156 HLA-DQB1 [+26996bp] C - 11 T vs. C - - <1 (-) 0 (-) >0.05
rs7774644 chr6:32724075 HLA-DQB2 C - 12 A vs. G 0.083 (G) - >1 (-) 9 (-) >0.05
rs7774929 chr6:32724147 HLA-DQB2 C - 12 A vs. C 0.083 (A) - <1 (-) 8 (-) >0.05
rs7774954 chr6:32724189 HLA-DQB2 C - 12 A vs. C 0.083 (A) - <1 (-) 9 (-) >0.05
rs117728701 chr6:32721726 HLA-DQB2 [-2149bp] C - 4 T vs. C - 0.1 (C) <1 (-) 0 (-) >0.05
rs17427494 chr6:32665001 HLA-DQB1 [+28841bp] C - 11 A vs. T - 0.133 (A) >1 (-) 0 (-) >0.05
rs9276462 chr6:32716170 HLA-DQA2 [+1178bp] C - 11 C vs. G 0.083 (C) - <1 (-) 18 (-) >0.05
rs9276463 chr6:32716181 HLA-DQA2 [+1189bp] C - 11 T vs. C 0.083 (C) - >1 (-) 18 (-) >0.05
rs9276461 chr6:32716167 HLA-DQA2 [+1175bp] C - 11 A vs. G 0.083 (A) - <1 (-) 18 (-) >0.05
rs9276446 chr6:32715448 HLA-DQA2 [+456bp] C - 11 A vs. G 0.083 (G) - >1 (-) 13 (-) >0.05
rs9461809 chr6:32734477 HLA-DQB2 [+3166bp] C - 9 T vs. C - - <1 (-) 13 (-) >0.05
rs9276235 chr6:32700972 HLA-DQA2 [-8147bp] C - 11 T vs. G - - >1 (-) 31 (-) >0.05
rs2894292 chr6:32721656 HLA-DQB2 [-2219bp] C - 12 A vs. G 0.083 (A) - <1 (-) 10 (-) >0.05
rs2647049 chr6:32672681 HLA-DQA2 [-36438bp] C - 12 A vs. C 0.083 (A) 0.15 (A) <1 (-) 0 (-) >0.05
rs2856705 chr6:32670956 HLA-DQB1 [+34796bp] C - 12 T vs. C 0.083 (T) 0.167 (T) <1 (-) 0 (-) >0.05
rs112767544 chr6:32665100 HLA-DQB1 [+28940bp] C - 7 A vs. C - 0.042 (A) <1 (-) 28 (-) >0.05
rs12192514 chr6:32674240 HLA-DQA2 [-34879bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs7774973 chr6:32724267 HLA-DQB2 C - 12 A vs. G 0.083 (G) - >1 (-) 10 (-) >0.05
rs9276554 chr6:32722702 HLA-DQB2 [-1173bp] C - 12 T vs. C 0.075 (T) - <1 (-) 9 (-) >0.05
rs140055405 chr6:32665136 HLA-DQB1 [+28976bp] C - 7 T vs. G - - >1 (-) 28 (-) >0.05
rs9276547 chr6:32722155 HLA-DQB2 [-1720bp] C - 12 A vs. G 0.083 (A) - <1 (-) 9 (-) >0.05
rs112495399 chr6:32665155 HLA-DQB1 [+28995bp] C - 7 T vs. C - - >1 (-) 28 (-) >0.05
rs9276546 chr6:32722129 HLA-DQB2 [-1746bp] C - 12 T vs. C 0.083 (T) - <1 (-) 9 (-) >0.05
rs28371272 chr6:32674440 HLA-DQA2 [-34679bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs28371273 chr6:32674442 HLA-DQA2 [-34677bp] C - 12 C vs. G - - <1 (-) 0 (-) >0.05
rs2858886 chr6:32695236 HLA-DQA2 [-13883bp] C - 10 T vs. G 0.342 (T) 0.367 (G) >1 (-) 16 (-) >0.05
rs16898262 chr6:32677397 HLA-DQA2 [-31722bp] C - 12 A vs. G 0.083 (G) 0.083 (G) >1 (-) 0 (-) >0.05
rs2647007 chr6:32664677 HLA-DQB1 [+28517bp] C - 12 T vs. G 0.075 (G) 0.175 (G) >1 (-) 0 (-) >0.05
rs9461806 chr6:32710221 HLA-DQA2 C - 11 T vs. C 0.267 (T) 0.375 (C) >1 (-) 14 (-) >0.05
rs115075841 chr6:32736772 HLA-DQB2 [+5461bp] C - 12 T vs. C 0.083 (T) 0.108 (T) >1 (-) 0 (-) >0.05
rs2395255 chr6:32721639 HLA-DQB2 [-2236bp] C - 12 T vs. C 0.083 (C) - >1 (-) 9 (-) >0.05
rs9275744 chr6:32689013 HLA-DQA2 [-20106bp] C - 11 T vs. G 0.333 (T) 0.158 (T) <1 (-) 13 (-) >0.05

Association studies for this region [+]