HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2071550 chr6:32730940 HLA-DQB2 C - 12 A vs. C 0.258 (A) 0.45 (A) >1 (-) 2 (-) >0.05
rs2856673 chr6:32659822 HLA-DQB1 [+23662bp] C - 11 T vs. G 0.075 (T) 0.175 (T) <1 (-) 0 (-) >0.05
rs6906624 chr6:32734503 HLA-DQB2 [+3192bp] C - 11 T vs. C - - >1 (-) 8 (-) >0.05
rs9275854 chr6:32691227 HLA-DQA2 [-17892bp] C - 11 A vs. G 0.317 (G) 0.183 (G) >1 (-) 2 (-) >0.05
rs4394270 chr6:32709964 HLA-DQA2 C - 11 T vs. C 0.342 (C) 0.083 (C) >1 (-) 0 (-) >0.05
rs28986406 chr6:32755024 HLA-DQB2 [+23713bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs13213965 chr6:32705193 HLA-DQA2 [-3926bp] C - 11 T vs. C 0.342 (C) 0.208 (T) <1 (-) 19 (-) >0.05
rs17500400 chr6:32705459 HLA-DQA2 [-3660bp] C - 11 A vs. G 0.35 (G) 0.2 (A) <1 (-) 12 (-) >0.05
rs28755392 chr6:32678021 HLA-DQA2 [-31098bp] C - 12 T vs. C 0.067 (C) 0.017 (C) >1 (-) 0 (-) >0.05
rs112117693 chr6:32662754 HLA-DQB1 [+26594bp] C - 11 T vs. C 0.017 (T) 0.117 (T) >1 (-) 0 (-) >0.05
chr6:32745443 chr6:32745443 HLA-DQB2 [+14132bp] C - 5 A vs. G - - <1 (-) 0 (-) >0.05
rs9276152 chr6:32698283 HLA-DQA2 [-10836bp] C - 10 C vs. G 0.358 (C) 0.183 (C) <1 (-) 11 (-) >0.05
rs3129746 chr6:32687588 HLA-DQA2 [-21531bp] C - 12 A vs. C 0.3 (C) 0.158 (C) >1 (-) 2 (-) >0.05
rs114349466 chr6:32754326 HLA-DQB2 [+23015bp] C - 8 T vs. G - - <1 (-) 0 (-) >0.05
rs9276180 chr6:32699116 HLA-DQA2 [-10003bp] C - 11 T vs. C 0.292 (T) 0.158 (T) <1 (-) 9 (-) >0.05
rs13215244 chr6:32753053 HLA-DQB2 [+21742bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs9276186 chr6:32699197 HLA-DQA2 [-9922bp] C - 11 A vs. G 0.3 (G) 0.167 (G) >1 (-) 9 (-) >0.05
rs13214069 chr6:32705248 HLA-DQA2 [-3871bp] C - 11 T vs. C 0.342 (C) 0.258 (T) <1 (-) 17 (-) >0.05
rs9276185 chr6:32699179 HLA-DQA2 [-9940bp] C - 11 A vs. C 0.292 (A) 0.2 (A) <1 (-) 9 (-) >0.05
rs12660504 chr6:32743138 HLA-DQB2 [+11827bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs9276336 chr6:32705618 HLA-DQA2 [-3501bp] C - 11 T vs. C - - <1 (-) 0 (-) >0.05
rs2621412 chr6:32743000 HLA-DQB2 [+11689bp] C - 12 A vs. C 0.4 (C) 0.442 (C) <1 (-) 0 (-) >0.05
rs28986328 chr6:32741002 HLA-DQB2 [+9691bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs9275646 chr6:32685341 HLA-DQA2 [-23778bp] C - 10 T vs. C 0.117 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs35520662 chr6:32748029 HLA-DQB2 [+16718bp] C - 12 T vs. G 0.05 (G) - >1 (-) 18 (-) >0.05
rs28986410 chr6:32755087 HLA-DQB2 [+23776bp] C - 12 T vs. C 0.083 (C) 0.008 (C) <1 (-) 0 (-) >0.05
rs9275948 chr6:32693120 HLA-DQA2 [-15999bp] C - 10 A vs. C 0.15 (A) - <1 (-) 0 (-) >0.05
rs9275903 chr6:32692273 HLA-DQA2 [-16846bp] C - 10 T vs. C 0.142 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs9275706 chr6:32688163 HLA-DQA2 [-20956bp] C - 12 T vs. C 0.325 (T) 0.167 (T) <1 (-) 3 (-) >0.05
rs9348894 chr6:32732677 HLA-DQB2 [+1366bp] C - 11 A vs. T 0.258 (T) 0.458 (T) <1 (-) 8 (-) >0.05
rs7742085 chr6:32746178 HLA-DQB2 [+14867bp] C - 12 T vs. G - - >1 (-) 0 (-) >0.05
rs9276136 chr6:32697807 HLA-DQA2 [-11312bp] C - 11 T vs. C 0.3 (T) 0.167 (T) <1 (-) 11 (-) >0.05
rs2859084 chr6:32701839 HLA-DQA2 [-7280bp] C - 11 T vs. C - - <1 (-) 18 (-) >0.05
rs9275853 chr6:32691225 HLA-DQA2 [-17894bp] C - 11 T vs. G 0.333 (T) 0.167 (T) <1 (-) 2 (-) >0.05
rs9275680 chr6:32687218 HLA-DQA2 [-21901bp] C - 10 T vs. C 0.2 (T) 0.092 (T) >1 (-) 0 (-) >0.05
rs2894290 chr6:32707565 HLA-DQA2 [-1554bp] C - 11 T vs. C 0.325 (T) 0.225 (C) >1 (-) 2 (-) >0.05
rs9275902 chr6:32692238 HLA-DQA2 [-16881bp] C - 10 T vs. G 0.142 (G) - >1 (-) 0 (-) >0.05
rs9275693 chr6:32687866 HLA-DQA2 [-21253bp] C - 12 A vs. C 0.325 (A) 0.158 (A) <1 (-) 0 (-) >0.05
rs28986377 chr6:32752222 HLA-DQB2 [+20911bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs9276239 chr6:32701083 HLA-DQA2 [-8036bp] C - 11 C vs. G 0.308 (G) 0.158 (G) >1 (-) 10 (-) >0.05
rs2395250 chr6:32707566 HLA-DQA2 [-1553bp] C - 11 A vs. G 0.325 (G) 0.225 (A) <1 (-) 2 (-) >0.05
rs9276240 chr6:32701098 HLA-DQA2 [-8021bp] C - 11 T vs. G 0.317 (T) 0.158 (T) <1 (-) 10 (-) >0.05
rs9275689 chr6:32687689 HLA-DQA2 [-21430bp] C - 12 A vs. G 0.3 (G) 0.167 (G) >1 (-) 2 (-) >0.05
rs9276210 chr6:32699904 HLA-DQA2 [-9215bp] C - 11 T vs. G 0.317 (G) 0.158 (G) >1 (-) 8 (-) >0.05
rs9275688 chr6:32687668 HLA-DQA2 [-21451bp] C - 12 A vs. T 0.3 (A) 0.158 (A) <1 (-) 2 (-) >0.05
rs9276238 chr6:32701064 HLA-DQA2 [-8055bp] C - 11 T vs. C - - <1 (-) 11 (-) >0.05
rs9276184 chr6:32699170 HLA-DQA2 [-9949bp] C - 11 T vs. C 0.283 (C) 0.175 (C) >1 (-) 9 (-) >0.05
rs9276162 chr6:32698457 HLA-DQA2 [-10662bp] C - 11 A vs. G 0.3 (G) 0.167 (G) >1 (-) 12 (-) >0.05
rs9501662 chr6:32737007 HLA-DQB2 [+5696bp] C - 8 A vs. G - 0.025 (A) >1 (-) 0 (-) >0.05
rs9275674 chr6:32686806 HLA-DQA2 [-22313bp] C - 10 T vs. C 0.2 (T) 0.025 (T) >1 (-) 0 (-) >0.05

Association studies for this region [+]