HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9368741 chr6:32737507 HLA-DQB2 [+6196bp] C - 12 A vs. G 0.225 (A) 0.442 (A) >1 (-) 3 (-) >0.05
rs2857208 chr6:32743103 HLA-DQB2 [+11792bp] C - 12 T vs. C 0.083 (C) - >1 (-) 0 (-) >0.05
rs9275682 chr6:32687297 HLA-DQA2 [-21822bp] C - 10 A vs. G 0.2 (G) 0.058 (G) <1 (-) 0 (-) >0.05
rs9276011 chr6:32694692 HLA-DQA2 [-14427bp] C - 10 A vs. G 0.15 (A) 0.033 (A) <1 (-) 0 (-) >0.05
rs9275753 chr6:32689122 HLA-DQA2 [-19997bp] C - 12 T vs. C 0.3 (C) 0.158 (C) >1 (-) 13 (-) >0.05
rs75797445 chr6:32747073 HLA-DQB2 [+15762bp] C - 6 T vs. C - - <1 (-) 28 (-) >0.05
rs4394272 chr6:32717771 MIR3135B [+15bp] C - 11 T vs. C 0.083 (T) - <1 (-) 16 (-) >0.05
rs9276002 chr6:32694540 HLA-DQA2 [-14579bp] C - 10 T vs. C 0.15 (C) 0.033 (C) >1 (-) 0 (-) >0.05
rs12190295 chr6:32706950 HLA-DQA2 [-2169bp] C - 11 C vs. G 0.35 (G) 0.242 (C) <1 (-) 14 (-) >0.05
rs9276114 chr6:32697197 HLA-DQA2 [-11922bp] C - 10 T vs. C - - <1 (-) 24 (-) >0.05
rs9276160 chr6:32698421 HLA-DQA2 [-10698bp] C - 11 T vs. C 0.3 (T) 0.167 (T) <1 (-) 12 (-) >0.05
rs28986374 chr6:32752199 HLA-DQB2 [+20888bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs28893532 chr6:32747817 HLA-DQB2 [+16506bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs9276215 chr6:32700041 HLA-DQA2 [-9078bp] C - 11 T vs. G 0.308 (T) 0.158 (T) <1 (-) 11 (-) >0.05
rs9276133 chr6:32697768 HLA-DQA2 [-11351bp] C - 11 A vs. G 0.3 (A) 0.167 (A) <1 (-) 12 (-) >0.05
rs28893533 chr6:32747827 HLA-DQB2 [+16516bp] C - 12 T vs. G 0.083 (T) - >1 (-) 0 (-) >0.05
rs9276135 chr6:32697801 HLA-DQA2 [-11318bp] C - 11 A vs. G 0.3 (G) 0.167 (G) >1 (-) 11 (-) >0.05
rs2647050 chr6:32669767 HLA-DQB1 [+33607bp] C - 12 T vs. C 0.267 (C) 0.467 (C) >1 (-) 37 (-) >0.05
rs9276151 chr6:32698276 HLA-DQA2 [-10843bp] C - 11 T vs. C 0.333 (T) 0.158 (T) <1 (-) 12 (-) >0.05
rs9276293 chr6:32702868 HLA-DQA2 [-6251bp] C - 11 C vs. G 0.3 (C) 0.15 (C) <1 (-) 9 (-) >0.05
rs9275716 chr6:32688302 HLA-DQA2 [-20817bp] C - 12 T vs. C 0.308 (T) 0.167 (T) <1 (-) 3 (-) >0.05
rs7451194 chr6:32735645 HLA-DQB2 [+4334bp] C - 12 T vs. C 0.25 (C) 0.45 (C) <1 (-) 3 (-) >0.05
rs9275754 chr6:32689146 HLA-DQA2 [-19973bp] C - 12 C vs. G 0.3 (C) 0.158 (C) <1 (-) 11 (-) >0.05
rs9276291 chr6:32702813 HLA-DQA2 [-6306bp] C - 11 T vs. C 0.3 (T) 0.15 (T) <1 (-) 9 (-) >0.05
rs9275717 chr6:32688343 HLA-DQA2 [-20776bp] C - 12 A vs. C 0.3 (A) 0.167 (A) <1 (-) 4 (-) >0.05
rs9276515 chr6:32720177 MIR3135B [+2421bp] C - 11 A vs. G 0.5 (G) 0.233 (G) <1 (-) 24 (-) >0.05
rs28986391 chr6:32754294 HLA-DQB2 [+22983bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs9276139 chr6:32697907 HLA-DQA2 [-11212bp] C - 11 T vs. C 0.317 (T) 0.167 (T) <1 (-) 10 (-) >0.05
rs7751842 chr6:32698960 HLA-DQA2 [-10159bp] C - 11 A vs. C 0.308 (C) 0.167 (C) >1 (-) 11 (-) >0.05
rs9275692 chr6:32687766 HLA-DQA2 [-21353bp] C - 10 A vs. T 0.15 (T) 0.092 (T) >1 (-) 0 (-) >0.05
rs72500555 chr6:32734862 HLA-DQB2 [+3551bp] C - 8 A vs. G - 0.025 (G) <1 (-) 0 (-) >0.05
rs2857209 chr6:32741918 HLA-DQB2 [+10607bp] C - 12 A vs. G 0.392 (A) 0.442 (A) >1 (-) 0 (-) >0.05
rs143683997 chr6:32738119 HLA-DQB2 [+6808bp] C - 8 A vs. T - - <1 (-) 0 (-) >0.05
rs6919798 chr6:32732890 HLA-DQB2 [+1579bp] C - 12 A vs. G 0.067 (G) - >1 (-) 0 (-) >0.05
rs9276159 chr6:32698417 HLA-DQA2 [-10702bp] C - 11 A vs. G 0.308 (G) 0.167 (G) >1 (-) 11 (-) >0.05
rs2227129 chr6:32697739 HLA-DQA2 [-11380bp] C - 11 T vs. C 0.3 (C) 0.167 (C) >1 (-) 9 (-) >0.05
rs9275726 chr6:32688539 HLA-DQA2 [-20580bp] C - 10 T vs. G 0.15 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs9276297 chr6:32702946 HLA-DQA2 [-6173bp] C - 11 C vs. G 0.3 (G) 0.15 (G) >1 (-) 8 (-) >0.05
rs9469257 chr6:32699216 HLA-DQA2 [-9903bp] C - 11 A vs. G 0.35 (A) 0.342 (G) >1 (-) 18 (-) >0.05
rs2859091 chr6:32700799 HLA-DQA2 [-8320bp] C - 11 A vs. T 0.35 (T) 0.258 (A) <1 (-) 17 (-) >0.05
rs9275700 chr6:32688055 HLA-DQA2 [-21064bp] C - 12 T vs. G 0.3 (G) 0.167 (G) >1 (-) 4 (-) >0.05
rs9275701 chr6:32688060 HLA-DQA2 [-21059bp] C - 12 T vs. C 0.3 (T) 0.167 (T) <1 (-) 4 (-) >0.05
rs9276207 chr6:32699846 HLA-DQA2 [-9273bp] C - 11 T vs. C 0.317 (T) 0.158 (T) <1 (-) 10 (-) >0.05
rs115979309 chr6:32750575 HLA-DQB2 [+19264bp] C - 8 T vs. C - - <1 (-) 0 (-) >0.05
rs9276142 chr6:32697962 HLA-DQA2 [-11157bp] C - 11 T vs. C 0.3 (C) 0.158 (C) >1 (-) 8 (-) >0.05
rs5019292 chr6:32733719 HLA-DQB2 [+2408bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs7751856 chr6:32698988 HLA-DQA2 [-10131bp] C - 11 A vs. C 0.5 (A) 0.283 (C) >1 (-) 0 (-) >0.05
rs9276179 chr6:32699090 HLA-DQA2 [-10029bp] C - 11 A vs. G 0.167 (A) 0.067 (A) <1 (-) 0 (-) >0.05
rs9501209 chr6:32746518 HLA-DQB2 [+15207bp] C - 10 A vs. G - - >1 (-) 0 (-) >0.05
rs28724892 chr6:32743488 HLA-DQB2 [+12177bp] C - 12 A vs. G - 0.425 (A) >1 (-) 0 (-) >0.05

Association studies for this region [+]