HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276155 chr6:32698322 HLA-DQA2 [-10797bp] C - 11 A vs. C 0.3 (A) 0.167 (A) <1 (-) 11 (-) >0.05
rs2858304 chr6:32671044 HLA-DQB1 [+34884bp] C - 12 T vs. G 0.258 (T) 0.467 (T) <1 (-) 36 (-) >0.05
rs9276195 chr6:32699548 HLA-DQA2 [-9571bp] C - 11 T vs. C 0.308 (T) 0.125 (T) <1 (-) 9 (-) >0.05
rs9276229 chr6:32700741 HLA-DQA2 [-8378bp] C - 11 T vs. C 0.3 (T) 0.158 (T) <1 (-) 10 (-) >0.05
rs9276200 chr6:32699661 HLA-DQA2 [-9458bp] C - 11 T vs. C 0.3 (T) 0.158 (T) <1 (-) 9 (-) >0.05
rs2856704 chr6:32671014 HLA-DQB1 [+34854bp] C - 12 A vs. C 0.267 (A) 0.467 (A) <1 (-) 36 (-) >0.05
rs9276143 chr6:32697964 HLA-DQA2 [-11155bp] C - 11 A vs. G 0.3 (G) 0.158 (G) >1 (-) 8 (-) >0.05
rs2859112 chr6:32698013 HLA-DQA2 [-11106bp] C - 11 T vs. C 0.35 (T) 0.325 (C) >1 (-) 19 (-) >0.05
rs2263320 chr6:32745936 HLA-DQB2 [+14625bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs9276582 chr6:32728726 HLA-DQB2 C - 9 C vs. G 0.183 (C) - <1 (-) 0 (-) >0.05
rs3129743 chr6:32687212 HLA-DQA2 [-21907bp] C - 10 A vs. G 0.15 (G) - >1 (-) 0 (-) >0.05
rs9275686 chr6:32687570 HLA-DQA2 [-21549bp] C - 11 A vs. G 0.2 (A) 0.092 (A) >1 (-) 0 (-) >0.05
rs9276301 chr6:32703186 HLA-DQA2 [-5933bp] C - 11 A vs. G 0.3 (A) 0.158 (A) <1 (-) 8 (-) >0.05
rs9276493 chr6:32718869 MIR3135B [+1113bp] C - 11 T vs. G 0.092 (G) - >1 (-) 15 (-) >0.05
rs12203644 chr6:32706974 HLA-DQA2 [-2145bp] C - 11 A vs. G 0.35 (A) 0.225 (G) >1 (-) 15 (-) >0.05
rs9276137 chr6:32697887 HLA-DQA2 [-11232bp] C - 11 T vs. C 0.3 (T) 0.183 (T) <1 (-) 12 (-) >0.05
rs12190190 chr6:32706973 HLA-DQA2 [-2146bp] C - 11 T vs. C - - <1 (-) 15 (-) >0.05
rs2857204 chr6:32744347 HLA-DQB2 [+13036bp] C - 12 T vs. G 0.383 (T) 0.45 (T) >1 (-) 0 (-) >0.05
rs9276194 chr6:32699541 HLA-DQA2 [-9578bp] C - 11 T vs. C 0.308 (T) 0.158 (T) <1 (-) 9 (-) >0.05
rs2859098 chr6:32699691 HLA-DQA2 [-9428bp] C - 11 A vs. C 0.35 (A) 0.25 (C) >1 (-) 16 (-) >0.05
rs9276199 chr6:32699656 HLA-DQA2 [-9463bp] C - 11 A vs. C 0.3 (A) 0.158 (A) <1 (-) 9 (-) >0.05
rs2858879 chr6:32719117 MIR3135B [+1361bp] C - 11 C vs. G 0.1 (G) - >1 (-) 15 (-) >0.05
rs28986409 chr6:32755053 HLA-DQB2 [+23742bp] C - 12 A vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs9276294 chr6:32702875 HLA-DQA2 [-6244bp] C - 11 T vs. C 0.317 (T) 0.15 (T) <1 (-) 8 (-) >0.05
rs9276295 chr6:32702891 HLA-DQA2 [-6228bp] C - 11 A vs. G 0.3 (A) 0.15 (A) <1 (-) 8 (-) >0.05
rs9276296 chr6:32702930 HLA-DQA2 [-6189bp] C - 11 T vs. C 0.3 (C) 0.15 (C) >1 (-) 8 (-) >0.05
rs3104401 chr6:32687358 HLA-DQA2 [-21761bp] C - 10 A vs. G 0.15 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs28986387 chr6:32753149 HLA-DQB2 [+21838bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs9276288 chr6:32702769 HLA-DQA2 [-6350bp] C - 11 C vs. G 0.308 (G) 0.15 (G) >1 (-) 7 (-) >0.05
rs117891841 chr6:32683501 HLA-DQA2 [-25618bp] C - 5 T vs. C - 0.058 (C) >1 (-) 0 (-) >0.05
rs28986388 chr6:32753150 HLA-DQB2 [+21839bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs2856664 chr6:32665616 HLA-DQB1 [+29456bp] C - 12 T vs. G 0.267 (T) 0.5 (T) <1 (-) 43 (-) >0.05
rs9276570 chr6:32725619 HLA-DQB2 C - 5 T vs. C - - >1 (-) 14 (-) >0.05
rs9276571 chr6:32725620 HLA-DQB2 C - 5 A vs. G - - <1 (-) 15 (-) >0.05
rs9276218 chr6:32700295 HLA-DQA2 [-8824bp] C - 11 T vs. G 0.3 (T) 0.158 (T) <1 (-) 9 (-) >0.05
rs9275690 chr6:32687720 HLA-DQA2 [-21399bp] C - 11 A vs. G 0.2 (A) 0.092 (A) >1 (-) 0 (-) >0.05
rs9276287 chr6:32702745 HLA-DQA2 [-6374bp] C - 11 A vs. C 0.308 (A) 0.167 (A) <1 (-) 5 (-) >0.05
rs10947336 chr6:32704574 HLA-DQA2 [-4545bp] C - 11 A vs. C 0.35 (A) 0.217 (C) >1 (-) 7 (-) >0.05
rs9275697 chr6:32687960 HLA-DQA2 [-21159bp] C - 12 A vs. T 0.292 (A) 0.1 (A) <1 (-) 3 (-) >0.05
rs28371353 chr6:32710510 HLA-DQA2 C - 11 C vs. G 0.058 (G) - >1 (-) 0 (-) >0.05
rs9275670 chr6:32686677 HLA-DQA2 [-22442bp] C - 10 T vs. G 0.15 (T) - <1 (-) 0 (-) >0.05
rs9275696 chr6:32687904 HLA-DQA2 [-21215bp] C - 11 A vs. G 0.2 (G) 0.092 (G) <1 (-) 0 (-) >0.05
rs9276230 chr6:32700747 HLA-DQA2 [-8372bp] C - 11 A vs. C 0.308 (C) 0.167 (C) >1 (-) 10 (-) >0.05
rs9276196 chr6:32699569 HLA-DQA2 [-9550bp] C - 11 A vs. G 0.3 (G) 0.158 (G) >1 (-) 9 (-) >0.05
rs9275715 chr6:32688288 HLA-DQA2 [-20831bp] C - 10 A vs. G 0.15 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs9276214 chr6:32700032 HLA-DQA2 [-9087bp] C - 11 A vs. T 0.3 (A) 0.158 (A) <1 (-) 10 (-) >0.05
rs9276216 chr6:32700069 HLA-DQA2 [-9050bp] C - 11 A vs. T 0.3 (T) 0.158 (T) >1 (-) 10 (-) >0.05
rs9276202 chr6:32699716 HLA-DQA2 [-9403bp] C - 11 T vs. C 0.3 (C) 0.167 (C) >1 (-) 9 (-) >0.05
rs9276140 chr6:32697943 HLA-DQA2 [-11176bp] C - 11 T vs. C 0.3 (C) 0.158 (C) >1 (-) 12 (-) >0.05
rs9276141 chr6:32697945 HLA-DQA2 [-11174bp] C - 11 C vs. G 0.3 (G) 0.15 (G) >1 (-) 12 (-) >0.05

Association studies for this region [+]