HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276577 chr6:32726252 HLA-DQB2 C - 7 A vs. G 0.2 (G) - <1 (-) 0 (-) >0.05
rs9276578 chr6:32726274 HLA-DQB2 C - 7 A vs. G 0.2 (G) - <1 (-) 0 (-) >0.05
rs9275851 chr6:32691186 HLA-DQA2 [-17933bp] C - 11 T vs. C 0.325 (C) 0.175 (C) >1 (-) 14 (-) >0.05
rs9275734 chr6:32688783 HLA-DQA2 [-20336bp] C - 10 A vs. G 0.15 (A) 0.058 (A) <1 (-) 0 (-) >0.05
rs9275733 chr6:32688779 HLA-DQA2 [-20340bp] C - 10 A vs. G 0.15 (G) 0.067 (G) >1 (-) 0 (-) >0.05
rs12178088 chr6:32704617 HLA-DQA2 [-4502bp] C - 11 T vs. C 0.35 (T) 0.217 (C) >1 (-) 5 (-) >0.05
rs9275727 chr6:32688617 HLA-DQA2 [-20502bp] C - 12 T vs. G 0.325 (T) 0.158 (T) <1 (-) 7 (-) >0.05
rs9275912 chr6:32692393 HLA-DQA2 [-16726bp] C - 10 T vs. C 0.142 (C) 0.092 (C) >1 (-) 0 (-) >0.05
rs9276265 chr6:32702021 HLA-DQA2 [-7098bp] C - 11 T vs. C - - >1 (-) 3 (-) >0.05
rs9275774 chr6:32689668 HLA-DQA2 [-19451bp] C - 11 C vs. G 0.3 (G) 0.158 (G) >1 (-) 12 (-) >0.05
rs28986350 chr6:32749175 HLA-DQB2 [+17864bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs9275852 chr6:32691206 HLA-DQA2 [-17913bp] C - 11 T vs. C 0.3 (T) 0.167 (T) <1 (-) 11 (-) >0.05
rs9276274 chr6:32702391 HLA-DQA2 [-6728bp] C - 11 A vs. C 0.3 (A) 0.158 (A) <1 (-) 7 (-) >0.05
rs9276254 chr6:32701492 HLA-DQA2 [-7627bp] C - 11 A vs. G - - >1 (-) 16 (-) >0.05
rs9276685 chr6:32750857 HLA-DQB2 [+19546bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs9275828 chr6:32690740 HLA-DQA2 [-18379bp] C - 10 T vs. C 0.142 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs9275732 chr6:32688759 HLA-DQA2 [-20360bp] C - 10 T vs. C 0.15 (C) - >1 (-) 0 (-) >0.05
rs13198082 chr6:32756457 HLA-DOB [-24083bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs2859093 chr6:32700387 HLA-DQA2 [-8732bp] C - 11 T vs. G - - <1 (-) 18 (-) >0.05
rs28893555 chr6:32750573 HLA-DQB2 [+19262bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs35486885 chr6:32763506 HLA-DOB [-17034bp] C - 12 A vs. G 0.025 (G) 0.017 (G) >1 (-) 22 (-) >0.05
rs2856718 chr6:32670255 HLA-DQB1 [+34095bp] C - 12 T vs. C 0.267 (T) 0.467 (T) <1 (-) 35 (-) >0.05
rs9275850 chr6:32691185 HLA-DQA2 [-17934bp] C - 11 C vs. G 0.325 (C) 0.175 (C) <1 (-) 15 (-) >0.05
rs3957147 chr6:32682135 HLA-DQA2 [-26984bp] C - 10 T vs. C 0.117 (T) 0.05 (T) >1 (-) 0 (-) >0.05
rs9275743 chr6:32688925 HLA-DQA2 [-20194bp] C - 12 T vs. C 0.3 (C) 0.15 (C) >1 (-) 6 (-) >0.05
rs28986361 chr6:32751384 HLA-DQB2 [+20073bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs9276144 chr6:32697999 HLA-DQA2 [-11120bp] C - 11 A vs. T 0.308 (A) 0.158 (A) <1 (-) 12 (-) >0.05
rs2395253 chr6:32715160 HLA-DQA2 [+168bp] C - 3 A vs. G 0.075 (A) 0.033 (A) <1 (-) 0 (-) >0.05
rs9469246 chr6:32692227 HLA-DQA2 [-16892bp] C - 11 T vs. G 0.35 (G) 0.283 (T) <1 (-) 13 (-) >0.05
rs9275805 chr6:32690276 HLA-DQA2 [-18843bp] C - 11 T vs. C 0.308 (C) 0.15 (C) >1 (-) 6 (-) >0.05
rs17213281 chr6:32713018 HLA-DQA2 C - 6 T vs. C 0.117 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs9275891 chr6:32691932 HLA-DQA2 [-17187bp] C - 11 T vs. C 0.3 (C) 0.167 (C) >1 (-) 10 (-) >0.05
rs17501072 chr6:32755122 HLA-DQB2 [+23811bp] C - 12 C vs. G 0.092 (G) 0.008 (G) <1 (-) 0 (-) >0.05
rs9275927 chr6:32692780 HLA-DQA2 [-16339bp] C - 10 A vs. G 0.15 (A) 0.033 (A) <1 (-) 0 (-) >0.05
rs3129734 chr6:32685503 HLA-DQA2 [-23616bp] C - 10 T vs. C 0.15 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs9276426 chr6:32711738 HLA-DQA2 C - 11 A vs. C 0.15 (A) 0.025 (A) <1 (-) 0 (-) >0.05
rs28986380 chr6:32752392 HLA-DQB2 [+21081bp] C - 12 A vs. G 0.075 (G) - <1 (-) 0 (-) >0.05
rs7755597 chr6:32706480 HLA-DQA2 [-2639bp] C - 11 T vs. C 0.292 (C) 0.125 (C) >1 (-) 21 (-) >0.05
rs7755596 chr6:32706478 HLA-DQA2 [-2641bp] C - 11 T vs. C 0.292 (C) 0.125 (C) >1 (-) 21 (-) >0.05
rs9276581 chr6:32727267 HLA-DQB2 C - 11 C vs. G 0.492 (C) 0.233 (C) >1 (-) 34 (-) >0.05
rs9275728 chr6:32688638 HLA-DQA2 [-20481bp] C - 11 T vs. C 0.208 (C) 0.083 (C) <1 (-) 0 (-) >0.05
rs9275778 chr6:32689754 HLA-DQA2 [-19365bp] C - 11 T vs. C 0.308 (C) 0.183 (C) >1 (-) 13 (-) >0.05
rs9275723 chr6:32688483 HLA-DQA2 [-20636bp] C - 11 A vs. C 0.2 (A) 0.092 (A) >1 (-) 0 (-) >0.05
rs9276273 chr6:32702385 HLA-DQA2 [-6734bp] C - 11 A vs. G 0.3 (A) 0.158 (A) <1 (-) 7 (-) >0.05
rs2859104 chr6:32698809 HLA-DQA2 [-10310bp] C - 8 T vs. C - 0.058 (T) >1 (-) 0 (-) >0.05
rs13212165 chr6:32747029 HLA-DQB2 [+15718bp] C - 12 A vs. G 0.092 (A) - >1 (-) 0 (-) >0.05
rs9275802 chr6:32690251 HLA-DQA2 [-18868bp] C - 11 A vs. C 0.3 (C) 0.183 (C) >1 (-) 9 (-) >0.05
rs9276205 chr6:32699751 HLA-DQA2 [-9368bp] C - 11 A vs. T 0.35 (A) - <1 (-) 8 (-) >0.05
rs2856719 chr6:32669926 HLA-DQB1 [+33766bp] C - 12 C vs. G 0.267 (G) 0.467 (G) >1 (-) 36 (-) >0.05
rs2857151 chr6:32763514 HLA-DOB [-17026bp] C - 11 A vs. G 0.392 (A) 0.25 (A) <1 (-) 23 (-) >0.05

Association studies for this region [+]