HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276646 chr6:32745200 HLA-DQB2 [+13889bp] C - 12 A vs. T 0.267 (T) 0.25 (T) >1 (-) 0 (-) >0.05
rs7760168 chr6:32746051 HLA-DQB2 [+14740bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs5019294 chr6:32733580 HLA-DQB2 [+2269bp] C - 12 A vs. G 0.417 (G) - >1 (-) 31 (-) >0.05
rs17500510 chr6:32712818 HLA-DQA2 C - 8 A vs. G 0.083 (A) 0.033 (A) <1 (-) 24 (-) >0.05
rs28772323 chr6:32687066 HLA-DQA2 [-22053bp] C - 12 A vs. C 0.35 (C) 0.342 (A) <1 (-) 16 (-) >0.05
rs9276558 chr6:32724061 HLA-DQB2 C - 12 A vs. G 0.492 (A) 0.233 (A) >1 (-) 30 (-) >0.05
rs3213490 chr6:32724258 HLA-DQB2 C - 12 T vs. C 0.417 (T) 0.233 (C) >1 (-) 28 (-) >0.05
rs9275909 chr6:32692339 HLA-DQA2 [-16780bp] C - 11 T vs. C - - <1 (-) 10 (-) >0.05
rs3213486 chr6:32724324 HLA-DQB2 C - 12 T vs. C 0.5 (C) 0.233 (T) >1 (-) 26 (-) >0.05
rs3213487 chr6:32724317 HLA-DQB2 C - 12 T vs. C 0.492 (C) 0.233 (C) <1 (-) 26 (-) >0.05
rs9276728 chr6:32764042 HLA-DOB [-16498bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs2859079 chr6:32702381 HLA-DQA2 [-6738bp] C - 11 T vs. G 0.192 (G) 0.075 (G) <1 (-) 0 (-) >0.05
rs9276052 chr6:32695783 HLA-DQA2 [-13336bp] C - 10 A vs. G 0.308 (A) 0.142 (A) <1 (-) 30 (-) >0.05
rs9276053 chr6:32695790 HLA-DQA2 [-13329bp] C - 10 T vs. C 0.308 (T) 0.125 (T) <1 (-) 30 (-) >0.05
rs9276313 chr6:32704706 HLA-DQA2 [-4413bp] C - 11 A vs. G 0.2 (A) - >1 (-) 0 (-) >0.05
rs2857161 chr6:32759297 HLA-DOB [-21243bp] C - 12 A vs. G 0.433 (G) 0.25 (G) <1 (-) 12 (-) >0.05
rs9469232 chr6:32688313 HLA-DQA2 [-20806bp] C - 12 A vs. G 0.342 (A) 0.317 (G) >1 (-) 15 (-) >0.05
rs73732643 chr6:32696516 HLA-DQA2 [-12603bp] C - 3 A vs. C - - >1 (-) 0 (-) >0.05
rs9275956 chr6:32693272 HLA-DQA2 [-15847bp] C - 11 A vs. T 0.358 (T) 0.167 (T) >1 (-) 13 (-) >0.05
rs73732642 chr6:32696194 HLA-DQA2 [-12925bp] C - 3 A vs. C - - >1 (-) 0 (-) >0.05
rs9276275 chr6:32702421 HLA-DQA2 [-6698bp] C - 11 T vs. C 0.317 (T) 0.125 (T) <1 (-) 13 (-) >0.05
rs7753017 chr6:32727325 HLA-DQB2 C - 11 A vs. G 0.492 (A) 0.233 (A) >1 (-) 34 (-) >0.05
rs9276721 chr6:32762309 HLA-DOB [-18231bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs9275942 chr6:32693031 HLA-DQA2 [-16088bp] C - 11 A vs. C - - <1 (-) 5 (-) >0.05
rs2301271 chr6:32725193 HLA-DQB2 C - 12 A vs. G 0.492 (A) 0.175 (A) >1 (-) 26 (-) >0.05
rs28772322 chr6:32687057 HLA-DQA2 [-22062bp] C - 12 C vs. G 0.35 (C) 0.35 (G) >1 (-) 16 (-) >0.05
rs9276722 chr6:32762391 HLA-DOB [-18149bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs1894412 chr6:32734829 HLA-DQB2 [+3518bp] C - 12 T vs. C 0.425 (T) 0.333 (C) <1 (-) 31 (-) >0.05
rs1573646 chr6:32731624 HLA-DQB2 [+313bp] C - 12 T vs. G 0.425 (G) 0.333 (T) >1 (-) 33 (-) >0.05
rs17500468 chr6:32711178 HLA-DQA2 C - 8 A vs. G 0.133 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs2621415 chr6:32741894 HLA-DQB2 [+10583bp] C - 12 T vs. C 0.342 (T) 0.292 (T) <1 (-) 11 (-) >0.05
rs2621383 chr6:32759335 HLA-DOB [-21205bp] C - 12 A vs. C 0.433 (C) 0.2 (C) <1 (-) 12 (-) >0.05
rs9276632 chr6:32744429 HLA-DQB2 [+13118bp] C - 12 T vs. C 0.417 (C) 0.275 (C) >1 (-) 9 (-) >0.05
rs9276655 chr6:32746574 HLA-DQB2 [+15263bp] C - 12 A vs. G - - >1 (-) 20 (-) >0.05
rs9276729 chr6:32764246 HLA-DOB [-16294bp] C - 12 A vs. G 0.092 (A) 0.008 (A) >1 (-) 0 (-) >0.05
rs12205165 chr6:32686285 HLA-DQA2 [-22834bp] C - 12 T vs. C 0.35 (C) 0.333 (T) <1 (-) 14 (-) >0.05
rs2857211 chr6:32740442 HLA-DQB2 [+9131bp] C - 12 A vs. G 0.4 (A) 0.25 (A) <1 (-) 2 (-) >0.05
rs2859089 chr6:32701126 HLA-DQA2 [-7993bp] C - 11 T vs. C - - <1 (-) 10 (-) >0.05
rs9276375 chr6:32707585 HLA-DQA2 [-1534bp] C - 11 A vs. G 0.208 (A) - >1 (-) 0 (-) >0.05
rs9501648 chr6:32668886 HLA-DQB1 [+32726bp] C - 12 C vs. G 0.183 (G) 0.3 (G) >1 (-) 0 (-) >0.05
rs9275955 chr6:32693265 HLA-DQA2 [-15854bp] C - 11 A vs. T 0.367 (T) - >1 (-) 12 (-) >0.05
rs9276724 chr6:32763635 HLA-DOB [-16905bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs2857174 chr6:32754768 HLA-DQB2 [+23457bp] C - 12 T vs. C 0.433 (T) 0.242 (T) <1 (-) 5 (-) >0.05
rs9469264 chr6:32710692 HLA-DQA2 C - 10 T vs. G - - >1 (-) 7 (-) >0.05
rs9501202 chr6:32746284 HLA-DQB2 [+14973bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs9276725 chr6:32763818 HLA-DOB [-16722bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs9276252 chr6:32701451 HLA-DQA2 [-7668bp] C - 11 A vs. T - - >1 (-) 0 (-) >0.05
rs9276276 chr6:32702422 HLA-DQA2 [-6697bp] C - 11 A vs. G 0.3 (G) 0.125 (G) >1 (-) 12 (-) >0.05
rs9276292 chr6:32702864 HLA-DQA2 [-6255bp] C - 11 A vs. G 0.208 (G) - <1 (-) 0 (-) >0.05
rs117586629 chr6:32739975 HLA-DQB2 [+8664bp] C - 9 A vs. C - 0.1 (A) <1 (-) 0 (-) >0.05

Association studies for this region [+]