HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs35406540 chr6:32670368 HLA-DQB1 [+34208bp] C - 12 A vs. G 0.15 (G) 0.167 (G) <1 (-) 58 (-) <0.05
rs9275573 chr6:32679146 HLA-DQA2 [-29973bp] C - 12 C vs. G 0.433 (C) 0.383 (C) >1 (-) 22 (-) <0.05
rs4476871 chr6:32678867 HLA-DQA2 [-30252bp] C - 12 A vs. G 0.433 (G) 0.358 (G) <1 (-) 22 (-) <0.05
rs3998157 chr6:32678477 HLA-DQA2 [-30642bp] C - 12 A vs. C 0.425 (C) 0.375 (C) <1 (-) 22 (-) <0.05
rs9275572 chr6:32678999 HLA-DQA2 [-30120bp] C - 12 A vs. G 0.425 (A) 0.375 (A) >1 (-) 22 (-) <0.05
rs2647040 chr6:32667280 HLA-DQB1 [+31120bp] C - 12 A vs. G 0.408 (A) 0.225 (A) >1 (-) 34 (-) <0.05
rs35122968 chr6:32682199 HLA-DQA2 [-26920bp] C - 11 T vs. C 0.092 (C) 0.083 (C) >1 (-) 0 (-) <0.05
rs9275567 chr6:32678131 HLA-DQA2 [-30988bp] C - 12 A vs. G 0.442 (A) 0.392 (A) >1 (-) 22 (-) <0.05
rs9275570 chr6:32678199 HLA-DQA2 [-30920bp] C - 12 A vs. G 0.425 (G) 0.392 (G) <1 (-) 22 (-) <0.05
rs6932517 chr6:32678182 HLA-DQA2 [-30937bp] C - 12 C vs. G 0.425 (C) 0.375 (C) >1 (-) 22 (-) <0.05
rs9275538 chr6:32676017 HLA-DQA2 [-33102bp] C - 12 T vs. C 0.45 (T) 0.4 (T) >1 (-) 24 (-) <0.05
rs9275579 chr6:32679459 HLA-DQA2 [-29660bp] C - 12 A vs. T 0.308 (A) 0.242 (A) <1 (-) 69 (-) <0.05
rs3104407 chr6:32682452 HLA-DQA2 [-26667bp] C - 10 A vs. G 0.458 (A) 0.367 (G) <1 (-) 0 (-) <0.05
rs4273729 chr6:32678597 HLA-DQA2 [-30522bp] C - 12 C vs. G 0.433 (C) 0.375 (C) >1 (-) 23 (-) <0.05
rs9275518 chr6:32674700 HLA-DQA2 [-34419bp] C - 12 A vs. G 0.425 (G) - <1 (-) 23 (-) <0.05
rs9275556 chr6:32677190 HLA-DQA2 [-31929bp] C - 12 T vs. C 0.425 (C) 0.375 (C) <1 (-) 22 (-) <0.05
rs9275557 chr6:32677199 HLA-DQA2 [-31920bp] C - 12 T vs. C 0.425 (C) 0.367 (C) <1 (-) 22 (-) <0.05
rs9275524 chr6:32675109 HLA-DQA2 [-34010bp] C - 12 T vs. C 0.425 (T) 0.375 (T) >1 (-) 23 (-) <0.05
rs2856670 chr6:32662904 HLA-DQB1 [+26744bp] C - 12 C vs. G 0.425 (G) 0.25 (G) <1 (-) 35 (-) <0.05
rs9275535 chr6:32675789 HLA-DQA2 [-33330bp] C - 12 A vs. G 0.433 (G) 0.425 (G) <1 (-) 23 (-) <0.05
rs9380318 chr6:32677669 HLA-DQA2 [-31450bp] C - 12 T vs. C 0.417 (C) 0.367 (C) <1 (-) 23 (-) <0.05
rs28451714 chr6:32671601 HLA-DQB1 [+35441bp] C - 11 T vs. G 0.15 (T) 0.167 (T) >1 (-) 63 (-) <0.05
rs2856725 chr6:32666738 HLA-DQB1 [+30578bp] C - 12 T vs. C 0.408 (C) 0.233 (C) <1 (-) 35 (-) <0.05
rs68037968 chr6:32669817 HLA-DQB1 [+33657bp] C - 12 T vs. C - - <1 (-) 59 (-) <0.05
rs9275522 chr6:32674970 HLA-DQA2 [-34149bp] C - 12 T vs. C 0.308 (T) 0.242 (T) <1 (-) 69 (-) <0.05
rs9275540 chr6:32676139 HLA-DQA2 [-32980bp] C - 12 A vs. T 0.425 (T) 0.425 (T) <1 (-) 23 (-) <0.05
rs9275555 chr6:32677088 HLA-DQA2 [-32031bp] C - 12 T vs. C 0.308 (T) 0.242 (T) <1 (-) 69 (-) <0.05
rs9275536 chr6:32675829 HLA-DQA2 [-33290bp] C - 12 A vs. G 0.425 (A) 0.425 (A) >1 (-) 24 (-) <0.05
rs79876547 chr6:32669137 HLA-DQB1 [+32977bp] C - 12 T vs. C - - <1 (-) 59 (-) <0.05
rs9275578 chr6:32679384 HLA-DQA2 [-29735bp] C - 12 T vs. G 0.308 (T) 0.175 (T) <1 (-) 70 (-) <0.05
rs9275548 chr6:32676530 HLA-DQA2 [-32589bp] C - 12 T vs. C - - <1 (-) 70 (-) <0.05
rs9275547 chr6:32676525 HLA-DQA2 [-32594bp] C - 12 T vs. G - - >1 (-) 70 (-) <0.05
rs3134968 chr6:32674059 HLA-DQA2 [-35060bp] C - 10 A vs. G 0.275 (A) 0.092 (A) >1 (-) 16 (-) <0.05
rs9275517 chr6:32674649 HLA-DQA2 [-34470bp] C - 12 A vs. G 0.425 (A) 0.45 (A) >1 (-) 24 (-) <0.05
rs9275516 chr6:32674643 HLA-DQA2 [-34476bp] C - 12 A vs. G 0.425 (A) 0.45 (A) >1 (-) 24 (-) <0.05
rs4516986 chr6:32678323 HLA-DQA2 [-30796bp] C - 12 C vs. G 0.308 (C) 0.2 (C) <1 (-) 70 (-) <0.05
rs3135006 chr6:32667119 HLA-DQB1 [+30959bp] C - 12 T vs. C 0.292 (T) 0.125 (T) >1 (-) 27 (-) <0.05
rs2858318 chr6:32661302 HLA-DQB1 [+25142bp] C - 12 T vs. G 0.425 (T) 0.267 (T) >1 (-) 40 (-) <0.05
rs9275527 chr6:32675378 HLA-DQA2 [-33741bp] C - 12 C vs. G 0.308 (G) 0.2 (G) >1 (-) 69 (-) <0.05
rs9275515 chr6:32674573 HLA-DQA2 [-34546bp] C - 12 T vs. C 0.467 (T) 0.417 (T) >1 (-) 24 (-) <0.05
rs2858321 chr6:32661166 HLA-DQB1 [+25006bp] C - 12 T vs. C 0.483 (T) 0.367 (C) <1 (-) 34 (-) <0.05
rs9275281 chr6:32662920 HLA-DQB1 [+26760bp] C - 12 A vs. G 0.5 (G) 0.425 (G) <1 (-) 0 (-) <0.05
rs2856727 chr6:32666397 HLA-DQB1 [+30237bp] C - 12 T vs. C 0.417 (C) 0.242 (C) <1 (-) 35 (-) <0.05
rs9275545 chr6:32676355 HLA-DQA2 [-32764bp] C - 12 T vs. C 0.308 (T) 0.233 (T) <1 (-) 69 (-) <0.05
rs3104404 chr6:32682174 HLA-DQA2 [-26945bp] C - 11 A vs. C 0.117 (A) 0.275 (A) >1 (-) 17 (-) <0.05
rs9275502 chr6:32673921 HLA-DQA2 [-35198bp] C - 11 A vs. G 0.308 (G) 0.317 (G) >1 (-) 68 (-) <0.05
rs9275501 chr6:32673920 HLA-DQA2 [-35199bp] C - 11 T vs. C 0.308 (T) 0.35 (T) <1 (-) 68 (-) <0.05
rs9275558 chr6:32677427 HLA-DQA2 [-31692bp] C - 12 T vs. G 0.308 (T) 0.25 (T) <1 (-) 69 (-) <0.05
rs2856723 chr6:32667762 HLA-DQB1 [+31602bp] C - 12 A vs. G 0.442 (A) 0.233 (A) >1 (-) 34 (-) <0.05
rs2647012 chr6:32664458 HLA-DQB1 [+28298bp] C - 11 T vs. C 0.417 (T) 0.233 (T) >1 (-) 41 (-) <0.05

Association studies for this region [+]