HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2213569 chr6:32721574 HLA-DQB2 [-2301bp] C - 12 T vs. C 0.492 (C) 0.233 (C) <1 (-) 25 (-) >0.05
rs9276428 chr6:32712085 HLA-DQA2 C - 11 T vs. G 0.492 (G) 0.175 (G) >1 (-) 28 (-) >0.05
rs5027459 chr6:32719028 MIR3135B [+1272bp] C - 11 A vs. G 0.292 (G) 0.125 (G) <1 (-) 26 (-) >0.05
rs112044727 chr6:32663781 HLA-DQB1 [+27621bp] C - 8 T vs. G - - >1 (-) 19 (-) >0.05
rs112205942 chr6:32664058 HLA-DQB1 [+27898bp] C - 8 A vs. G - 0.042 (G) >1 (-) 20 (-) >0.05
rs5000632 chr6:32663688 HLA-DQB1 [+27528bp] C - 12 T vs. C 0.183 (C) 0.292 (C) >1 (-) 2 (-) >0.05
rs9276444 chr6:32715371 HLA-DQA2 [+379bp] C - 11 C vs. G - - <1 (-) 29 (-) >0.05
rs9275421 chr6:32670477 HLA-DQB1 [+34317bp] C - 11 A vs. C 0.325 (A) 0.283 (A) >1 (-) 52 (-) >0.05
rs2621400 chr6:32750318 HLA-DQB2 [+19007bp] C - 12 C vs. G 0.417 (G) 0.233 (G) <1 (-) 6 (-) >0.05
rs141357388 chr6:32762799 HLA-DOB [-17741bp] C - 3 A vs. C - - >1 (-) 0 (-) >0.05
rs28891490 chr6:32660697 HLA-DQB1 [+24537bp] C - 11 A vs. C 0.133 (A) 0.208 (A) <1 (-) 0 (-) >0.05
rs13203691 chr6:32752647 HLA-DQB2 [+21336bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs1794280 chr6:32667171 HLA-DQB1 [+31011bp] C - 8 A vs. T 0.1 (T) - <1 (-) 0 (-) >0.05
rs13219964 chr6:32752649 HLA-DQB2 [+21338bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs9276534 chr6:32721195 HLA-DQB2 [-2680bp] C - 12 T vs. C 0.492 (C) 0.233 (C) <1 (-) 25 (-) >0.05
rs9276427 chr6:32711857 HLA-DQA2 C - 11 T vs. C 0.425 (C) 0.2 (T) <1 (-) 34 (-) >0.05
rs28892574 chr6:32756320 HLA-DOB [-24220bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs9276482 chr6:32718162 MIR3135B [+406bp] C - 11 T vs. C 0.492 (C) 0.125 (C) >1 (-) 29 (-) >0.05
rs28772287 chr6:32674400 HLA-DQA2 [-34719bp] C - 12 T vs. C 0.183 (C) 0.325 (C) <1 (-) 8 (-) >0.05
rs2621395 chr6:32754367 HLA-DQB2 [+23056bp] C - 12 T vs. G - - <1 (-) 4 (-) >0.05
rs6457654 chr6:32735416 HLA-DQB2 [+4105bp] C - 12 A vs. G 0.35 (G) 0.242 (A) >1 (-) 21 (-) >0.05
rs2621399 chr6:32750951 HLA-DQB2 [+19640bp] C - 12 T vs. C 0.408 (C) 0.233 (C) <1 (-) 6 (-) >0.05
rs5021452 chr6:32708074 HLA-DQA2 [-1045bp] C - 11 T vs. C 0.192 (T) 0.05 (T) >1 (-) 0 (-) >0.05
rs73404808 chr6:32731932 HLA-DQB2 [+621bp] C - 11 C vs. G - 0.133 (G) >1 (-) 0 (-) >0.05
rs9276440 chr6:32714783 HLA-DQA2 C - 11 A vs. T 0.492 (A) 0.233 (A) >1 (-) 31 (-) >0.05
rs16870693 chr6:32711691 HLA-DQA2 C - 6 A vs. C 0.008 (A) 0.133 (A) <1 (-) 11 (-) >0.05
rs9276672 chr6:32749606 HLA-DQB2 [+18295bp] C - 12 A vs. C 0.342 (C) 0.233 (C) >1 (-) 11 (-) >0.05
rs9357152 chr6:32664960 HLA-DQB1 [+28800bp] C - 12 A vs. G 0.183 (G) 0.292 (G) >1 (-) 3 (-) >0.05
rs2857188 chr6:32749805 HLA-DQB2 [+18494bp] C - 12 A vs. G 0.15 (A) - <1 (-) 0 (-) >0.05
rs73733586 chr6:32722977 HLA-DQB2 [-898bp] C - 3 A vs. G - - <1 (-) 0 (-) >0.05
rs2857177 chr6:32752840 HLA-DQB2 [+21529bp] C - 12 T vs. C 0.433 (T) 0.233 (T) >1 (-) 7 (-) >0.05
rs1015575 chr6:32738115 HLA-DQB2 [+6804bp] C - 12 A vs. G 0.35 (A) 0.333 (G) >1 (-) 28 (-) >0.05
rs2213567 chr6:32711655 HLA-DQA2 C - 11 C vs. G 0.5 (C) 0.308 (G) <1 (-) 28 (-) >0.05
rs7754020 chr6:32722019 HLA-DQB2 [-1856bp] C - 12 A vs. T 0.492 (T) 0.233 (T) <1 (-) 24 (-) >0.05
rs2857189 chr6:32748943 HLA-DQB2 [+17632bp] C - 12 T vs. G 0.4 (G) 0.233 (G) <1 (-) 14 (-) >0.05
rs62396665 chr6:32737638 HLA-DQB2 [+6327bp] C - 11 T vs. C - - <1 (-) 0 (-) >0.05
rs3997849 chr6:32682402 HLA-DQA2 [-26717bp] C - 11 T vs. C 0.25 (T) 0.175 (T) >1 (-) 18 (-) >0.05
rs10807113 chr6:32722186 HLA-DQB2 [-1689bp] C - 11 A vs. C 0.425 (A) 0.233 (C) >1 (-) 30 (-) >0.05
rs17212699 chr6:32675130 HLA-DQA2 [-33989bp] C - 12 A vs. G 0.167 (G) 0.292 (G) <1 (-) 7 (-) >0.05
rs9275762 chr6:32689277 HLA-DQA2 [-19842bp] C - 12 T vs. C 0.458 (C) - >1 (-) 5 (-) >0.05
rs3997848 chr6:32682394 HLA-DQA2 [-26725bp] C - 11 T vs. G 0.242 (G) 0.183 (G) <1 (-) 18 (-) >0.05
rs9276454 chr6:32715846 HLA-DQA2 [+854bp] C - 11 A vs. G 0.492 (A) 0.2 (A) >1 (-) 30 (-) >0.05
rs112643393 chr6:32662826 HLA-DQB1 [+26666bp] C - 7 T vs. C - - <1 (-) 28 (-) >0.05
rs117177698 chr6:32731377 HLA-DQB2 [+66bp] C - 11 A vs. G - 0.1 (A) >1 (-) 0 (-) >0.05
rs1613056 chr6:32668946 HLA-DQB1 [+32786bp] C - 8 T vs. C 0.1 (T) 0.025 (T) >1 (-) 0 (-) >0.05
rs55877228 chr6:32706321 HLA-DQA2 [-2798bp] C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs117557023 chr6:32731608 HLA-DQB2 [+297bp] C - 11 T vs. G - 0.1 (T) >1 (-) 0 (-) >0.05
rs150190123 chr6:32749758 HLA-DQB2 [+18447bp] C - 11 A vs. G - - <1 (-) 21 (-) >0.05
rs28772281 chr6:32674086 HLA-DQA2 [-35033bp] C - 12 A vs. G 0.183 (A) 0.292 (A) >1 (-) 8 (-) >0.05
rs200126619 chr6:32731165 HLA-DQB2 C - 3 C vs. G - - >1 (-) 0 (-) >0.05

Association studies for this region [+]