HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs17219281 chr6:32675645 HLA-DQA2 [-33474bp] C - 10 A vs. G 0.075 (A) - <1 (-) 0 (-) <0.05
rs9275565 chr6:32677938 HLA-DQA2 [-31181bp] C - 12 T vs. C 0.417 (T) 0.375 (T) >1 (-) 22 (-) <0.05
rs9275564 chr6:32677927 HLA-DQA2 [-31192bp] C - 12 A vs. C 0.308 (A) 0.242 (A) <1 (-) 70 (-) <0.05
rs9275506 chr6:32674083 HLA-DQA2 [-35036bp] C - 12 A vs. G 0.308 (A) 0.15 (A) <1 (-) 69 (-) <0.05
rs9275488 chr6:32673269 HLA-DQA2 [-35850bp] C - 12 A vs. G 0.3 (A) 0.258 (A) <1 (-) 55 (-) <0.05
rs9275489 chr6:32673272 HLA-DQA2 [-35847bp] C - 12 T vs. C 0.308 (T) 0.25 (T) <1 (-) 55 (-) <0.05
rs2858319 chr6:32661294 HLA-DQB1 [+25134bp] C - 12 T vs. C 0.433 (T) 0.25 (T) >1 (-) 37 (-) <0.05
rs34492195 chr6:32670833 HLA-DQB1 [+34673bp] C - 11 A vs. G 0.15 (A) 0.033 (A) >1 (-) 67 (-) <0.05
rs3104402 chr6:32681676 HLA-DQA2 [-27443bp] C - 7 T vs. G 0.125 (T) - >1 (-) 29 (-) <0.05
rs9275285 chr6:32663080 HLA-DQB1 [+26920bp] C - 12 A vs. G 0.475 (G) 0.417 (A) >1 (-) 28 (-) <0.05
rs9275264 chr6:32662372 HLA-DQB1 [+26212bp] C - 12 A vs. G - - >1 (-) 31 (-) <0.05
rs2647046 chr6:32668336 HLA-DQB1 [+32176bp] C - 12 A vs. C 0.408 (A) 0.242 (A) >1 (-) 29 (-) <0.05
rs2856722 chr6:32667958 HLA-DQB1 [+31798bp] C - 12 A vs. G 0.442 (A) 0.217 (A) >1 (-) 32 (-) <0.05
rs2858310 chr6:32668323 HLA-DQB1 [+32163bp] C - 12 A vs. G 0.408 (G) 0.242 (G) <1 (-) 29 (-) <0.05
rs6457620 chr6:32663999 HLA-DQB1 [+27839bp] C - 12 C vs. G 0.492 (G) 0.45 (G) <1 (-) 10 (-) <0.05
rs9275288 chr6:32663203 HLA-DQB1 [+27043bp] C - 12 A vs. G 0.492 (G) 0.417 (A) >1 (-) 21 (-) <0.05
rs3135190 chr6:32667946 HLA-DQB1 [+31786bp] C - 12 T vs. G 0.283 (T) 0.125 (T) >1 (-) 28 (-) <0.05
rs9275480 chr6:32672668 HLA-DQA2 [-36451bp] C - 12 A vs. G 0.3 (A) 0.225 (A) <1 (-) 56 (-) <0.05
rs2858324 chr6:32660375 HLA-DQB1 [+24215bp] C - 12 A vs. G 0.417 (A) 0.233 (A) >1 (-) 38 (-) <0.05
rs9275478 chr6:32672654 HLA-DQA2 [-36465bp] C - 12 T vs. G 0.317 (T) 0.217 (T) <1 (-) 56 (-) <0.05
rs9275479 chr6:32672659 HLA-DQA2 [-36460bp] C - 12 T vs. C 0.308 (T) 0.217 (T) <1 (-) 56 (-) <0.05
rs719656 chr6:32752561 HLA-DQB2 [+21250bp] C - 12 A vs. C 0.033 (A) 0.142 (A) >1 (-) 0 (-) <0.05
rs2858331 chr6:32681277 HLA-DQA2 [-27842bp] C - 12 A vs. G 0.317 (G) 0.4 (G) <1 (-) 28 (-) <0.05
rs17850863 chr6:32726838 HLA-DQB2 C - 3 T vs. C 0.308 (C) 0.125 (C) <1 (-) 41 (-) <0.05
rs3129719 chr6:32661779 HLA-DQB1 [+25619bp] C - 11 T vs. G 0.292 (T) 0.125 (T) >1 (-) 34 (-) <0.05
rs9275514 chr6:32674566 HLA-DQA2 [-34553bp] C - 12 A vs. T 0.458 (T) 0.458 (T) <1 (-) 21 (-) <0.05
rs2894381 chr6:32682228 HLA-DQA2 [-26891bp] C - 11 A vs. G 0.2 (A) 0.342 (A) >1 (-) 13 (-) <0.05
rs9275277 chr6:32662677 HLA-DQB1 [+26517bp] C - 12 A vs. G 0.483 (A) 0.475 (G) <1 (-) 27 (-) <0.05
rs9275292 chr6:32663289 HLA-DQB1 [+27129bp] C - 12 A vs. C 0.492 (A) 0.433 (C) <1 (-) 23 (-) <0.05
rs5000633 chr6:32663610 HLA-DQB1 [+27450bp] C - 12 A vs. C 0.492 (A) 0.425 (C) <1 (-) 25 (-) <0.05
rs67838634 chr6:32662128 HLA-DQB1 [+25968bp] C - 12 A vs. G - - >1 (-) 20 (-) >0.05
rs9275366 chr6:32668171 HLA-DQB1 [+32011bp] C - 12 A vs. C 0.325 (C) 0.283 (C) >1 (-) 62 (-) >0.05
rs9275513 chr6:32674564 HLA-DQA2 [-34555bp] C - 12 A vs. T 0.467 (A) 0.442 (A) >1 (-) 22 (-) >0.05
rs9275368 chr6:32668183 HLA-DQB1 [+32023bp] C - 12 C vs. G 0.317 (G) 0.258 (G) >1 (-) 62 (-) >0.05
rs9275367 chr6:32668182 HLA-DQB1 [+32022bp] C - 12 A vs. G 0.325 (G) 0.267 (G) >1 (-) 62 (-) >0.05
rs3129731 chr6:32682207 HLA-DQA2 [-26912bp] C - 10 T vs. G 0.417 (T) 0.15 (T) >1 (-) 0 (-) >0.05
rs9275405 chr6:32669883 HLA-DQB1 [+33723bp] C - 12 A vs. G 0.333 (G) 0.3 (G) >1 (-) 58 (-) >0.05
rs9275276 chr6:32662676 HLA-DQB1 [+26516bp] C - 12 T vs. C 0.483 (C) 0.483 (C) >1 (-) 27 (-) >0.05
rs9275451 chr6:32671908 HLA-DQB1 [+35748bp] C - 4 T vs. G - - <1 (-) 56 (-) >0.05
rs9275295 chr6:32663391 HLA-DQB1 [+27231bp] C - 12 A vs. G 0.492 (G) 0.442 (A) >1 (-) 23 (-) >0.05
rs9275511 chr6:32674329 HLA-DQA2 [-34790bp] C - 12 A vs. G 0.492 (A) 0.442 (G) <1 (-) 23 (-) >0.05
rs9275286 chr6:32663143 HLA-DQB1 [+26983bp] C - 12 T vs. C - - >1 (-) 26 (-) >0.05
rs9275329 chr6:32666831 HLA-DQB1 [+30671bp] C - 12 T vs. G 0.317 (T) 0.292 (T) <1 (-) 65 (-) >0.05
rs6457617 chr6:32663851 HLA-DQB1 [+27691bp] C - 12 T vs. C 0.492 (C) 0.45 (C) <1 (-) 20 (-) >0.05
rs2858305 chr6:32670464 HLA-DQB1 [+34304bp] C - 12 T vs. G 0.408 (G) 0.242 (G) <1 (-) 29 (-) >0.05
rs9275323 chr6:32666609 HLA-DQB1 [+30449bp] C - 12 T vs. C 0.325 (C) 0.275 (C) >1 (-) 65 (-) >0.05
rs9275475 chr6:32672556 HLA-DQB1 [+36396bp] C - 12 A vs. G 0.325 (G) 0.258 (G) >1 (-) 57 (-) >0.05
rs2647051 chr6:32670897 HLA-DQB1 [+34737bp] C - 12 T vs. C 0.417 (T) 0.233 (T) >1 (-) 28 (-) >0.05
rs9275521 chr6:32674952 HLA-DQA2 [-34167bp] C - 12 T vs. C 0.408 (T) 0.233 (T) >1 (-) 27 (-) >0.05
rs9275263 chr6:32662344 HLA-DQB1 [+26184bp] C - 12 A vs. G - - >1 (-) 34 (-) >0.05

Association studies for this region [+]