HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275260 chr6:32661575 HLA-DQB1 [+25415bp] C - 12 T vs. C 0.492 (T) 0.442 (C) <1 (-) 21 (-) >0.05
rs9275471 chr6:32672491 HLA-DQB1 [+36331bp] C - 12 A vs. G 0.325 (A) 0.217 (A) <1 (-) 57 (-) >0.05
rs9275472 chr6:32672494 HLA-DQB1 [+36334bp] C - 12 A vs. G 0.325 (A) 0.217 (A) <1 (-) 57 (-) >0.05
rs9275284 chr6:32663073 HLA-DQB1 [+26913bp] C - 12 T vs. C 0.492 (T) 0.408 (C) <1 (-) 25 (-) >0.05
rs9275481 chr6:32672913 HLA-DQA2 [-36206bp] C - 12 A vs. T 0.325 (A) 0.258 (A) <1 (-) 60 (-) >0.05
rs201449386 chr6:32662239 HLA-DQB1 [+26079bp] C - 12 T vs. C - - >1 (-) 21 (-) >0.05
rs9275332 chr6:32666943 HLA-DQB1 [+30783bp] C - 12 A vs. G 0.317 (A) 0.275 (A) <1 (-) 64 (-) >0.05
rs17206147 chr6:32665311 HLA-DQB1 [+29151bp] C - 12 T vs. C 0.15 (C) 0.167 (C) <1 (-) 66 (-) >0.05
rs2395522 chr6:32664722 HLA-DQB1 [+28562bp] C - 12 A vs. T 0.492 (A) 0.408 (A) >1 (-) 21 (-) >0.05
rs9275259 chr6:32661572 HLA-DQB1 [+25412bp] C - 12 A vs. C 0.475 (A) 0.433 (C) <1 (-) 21 (-) >0.05
rs9275266 chr6:32662392 HLA-DQB1 [+26232bp] C - 12 C vs. G - - <1 (-) 28 (-) >0.05
rs9275239 chr6:32660717 HLA-DQB1 [+24557bp] C - 12 A vs. G 0.45 (A) 0.5 (A) <1 (-) 20 (-) >0.05
rs67373575 chr6:32682043 HLA-DQA2 [-27076bp] C - 11 A vs. T 0.133 (T) 0.117 (T) <1 (-) 69 (-) >0.05
rs9275265 chr6:32662389 HLA-DQB1 [+26229bp] C - 12 T vs. C - - <1 (-) 29 (-) >0.05
rs9275404 chr6:32669878 HLA-DQB1 [+33718bp] C - 12 T vs. C 0.333 (C) 0.308 (C) >1 (-) 58 (-) >0.05
rs9275271 chr6:32662533 HLA-DQB1 [+26373bp] C - 12 T vs. C - - >1 (-) 26 (-) >0.05
rs9275337 chr6:32667318 HLA-DQB1 [+31158bp] C - 12 T vs. G 0.317 (T) 0.292 (T) <1 (-) 66 (-) >0.05
rs72844346 chr6:32662033 HLA-DQB1 [+25873bp] C - 12 A vs. G - - >1 (-) 23 (-) >0.05
rs9275261 chr6:32661809 HLA-DQB1 [+25649bp] C - 12 T vs. C - - >1 (-) 25 (-) >0.05
rs9275282 chr6:32662974 HLA-DQB1 [+26814bp] C - 12 T vs. C 0.492 (T) 0.417 (C) <1 (-) 22 (-) >0.05
rs111391378 chr6:32662024 HLA-DQB1 [+25864bp] C - 12 A vs. G - - >1 (-) 23 (-) >0.05
rs9275482 chr6:32672932 HLA-DQA2 [-36187bp] C - 12 T vs. G 0.325 (T) 0.258 (T) <1 (-) 60 (-) >0.05
rs9275355 chr6:32667829 HLA-DQB1 [+31669bp] C - 12 T vs. C 0.3 (C) 0.275 (C) >1 (-) 64 (-) >0.05
rs3134966 chr6:32674298 HLA-DQA2 [-34821bp] C - 12 T vs. C 0.283 (T) 0.125 (T) >1 (-) 31 (-) >0.05
rs9275372 chr6:32668388 HLA-DQB1 [+32228bp] C - 12 T vs. C 0.325 (T) 0.292 (T) <1 (-) 62 (-) >0.05
rs202170080 chr6:32662240 HLA-DQB1 [+26080bp] C - 12 A vs. G - - <1 (-) 22 (-) >0.05
rs71556930 chr6:32668026 HLA-DQB1 [+31866bp] C - 11 T vs. C - - >1 (-) 71 (-) >0.05
rs9275269 chr6:32662459 HLA-DQB1 [+26299bp] C - 12 A vs. G - - >1 (-) 24 (-) >0.05
rs9275401 chr6:32669827 HLA-DQB1 [+33667bp] C - 12 C vs. G 0.325 (G) 0.292 (G) >1 (-) 60 (-) >0.05
rs9275354 chr6:32667820 HLA-DQB1 [+31660bp] C - 12 T vs. G 0.283 (G) 0.192 (G) >1 (-) 64 (-) >0.05
rs2856699 chr6:32671765 HLA-DQB1 [+35605bp] C - 12 A vs. G 0.408 (A) 0.242 (A) >1 (-) 30 (-) >0.05
rs66490218 chr6:32668105 HLA-DQB1 [+31945bp] C - 11 A vs. G 0.133 (A) 0.033 (A) >1 (-) 71 (-) >0.05
rs115675626 chr6:32669833 HLA-DQB1 [+33673bp] C - 11 A vs. G - - >1 (-) 67 (-) >0.05
rs3129726 chr6:32678206 HLA-DQA2 [-30913bp] C - 12 A vs. G 0.283 (G) 0.125 (G) <1 (-) 28 (-) >0.05
rs117773289 chr6:32675292 HLA-DQA2 [-33827bp] C - 10 A vs. G - 0.017 (G) <1 (-) 0 (-) >0.05
rs9275268 chr6:32662433 HLA-DQB1 [+26273bp] C - 12 A vs. G - - >1 (-) 26 (-) >0.05
rs3134997 chr6:32672039 HLA-DQB1 [+35879bp] C - 12 T vs. C - - >1 (-) 32 (-) >0.05
rs9275353 chr6:32667815 HLA-DQB1 [+31655bp] C - 12 T vs. G 0.275 (G) 0.175 (G) >1 (-) 65 (-) >0.05
rs9275352 chr6:32667807 HLA-DQB1 [+31647bp] C - 12 T vs. C 0.283 (T) 0.275 (T) <1 (-) 65 (-) >0.05
rs9275487 chr6:32673174 HLA-DQA2 [-35945bp] C - 12 T vs. C - - <1 (-) 59 (-) >0.05
rs9275440 chr6:32671596 HLA-DQB1 [+35436bp] C - 12 T vs. C 0.317 (T) 0.275 (T) <1 (-) 59 (-) >0.05
rs2647006 chr6:32660582 HLA-DQB1 [+24422bp] C - 11 A vs. C 0.475 (C) - >1 (-) 35 (-) >0.05
rs9275267 chr6:32662425 HLA-DQB1 [+26265bp] C - 12 A vs. G - - >1 (-) 27 (-) >0.05
rs9275240 chr6:32660722 HLA-DQB1 [+24562bp] C - 12 T vs. C 0.45 (T) 0.492 (T) <1 (-) 18 (-) >0.05
rs17206378 chr6:32675161 HLA-DQA2 [-33958bp] C - 11 T vs. G 0.133 (T) 0.125 (T) >1 (-) 71 (-) >0.05
rs35332745 chr6:32674225 HLA-DQA2 [-34894bp] C - 11 T vs. C - - <1 (-) 71 (-) >0.05
rs35472821 chr6:32674529 HLA-DQA2 [-34590bp] C - 11 C vs. G - - >1 (-) 71 (-) >0.05
rs4713586 chr6:32659582 HLA-DQB1 [+23422bp] C - 8 A vs. G 0.017 (G) 0.125 (G) <1 (-) 0 (-) >0.05
rs9275357 chr6:32667891 HLA-DQB1 [+31731bp] C - 12 A vs. C 0.325 (C) 0.25 (C) >1 (-) 64 (-) >0.05
rs9275241 chr6:32660741 HLA-DQB1 [+24581bp] C - 12 T vs. G 0.458 (T) 0.483 (T) <1 (-) 20 (-) >0.05

Association studies for this region [+]