HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs4713589 chr6:32659435 HLA-DQB1 [+23275bp] C - 11 A vs. G - - <1 (-) 40 (-) >0.05
rs9275407 chr6:32670037 HLA-DQB1 [+33877bp] C - 12 T vs. G 0.325 (T) 0.292 (T) <1 (-) 62 (-) >0.05
rs9275232 chr6:32660574 HLA-DQB1 [+24414bp] C - 12 A vs. C 0.442 (A) 0.492 (C) <1 (-) 19 (-) >0.05
rs9275497 chr6:32673726 HLA-DQA2 [-35393bp] C - 12 A vs. G 0.317 (G) 0.242 (G) >1 (-) 63 (-) >0.05
rs9275242 chr6:32660774 HLA-DQB1 [+24614bp] C - 12 T vs. C 0.492 (T) 0.458 (C) <1 (-) 24 (-) >0.05
rs71565344 chr6:32673965 HLA-DQA2 [-35154bp] C - 11 A vs. G - - >1 (-) 71 (-) >0.05
rs9275371 chr6:32668296 HLA-DQB1 [+32136bp] C - 12 T vs. C 0.325 (C) 0.292 (C) >1 (-) 63 (-) >0.05
rs9275245 chr6:32660943 HLA-DQB1 [+24783bp] C - 12 A vs. G 0.492 (A) 0.408 (A) >1 (-) 20 (-) >0.05
rs115262684 chr6:32666235 HLA-DQB1 [+30075bp] C - 11 A vs. G - 0.1 (A) >1 (-) 0 (-) >0.05
rs9275423 chr6:32670564 HLA-DQB1 [+34404bp] C - 12 T vs. G 0.325 (T) 0.275 (T) <1 (-) 62 (-) >0.05
rs9275441 chr6:32671676 HLA-DQB1 [+35516bp] C - 12 A vs. C 0.317 (A) 0.267 (A) <1 (-) 61 (-) >0.05
rs9275485 chr6:32673077 HLA-DQA2 [-36042bp] C - 12 A vs. G - - <1 (-) 62 (-) >0.05
rs9275424 chr6:32670576 HLA-DQB1 [+34416bp] C - 12 A vs. G 0.325 (G) 0.292 (G) >1 (-) 62 (-) >0.05
rs9275408 chr6:32670110 HLA-DQB1 [+33950bp] C - 12 T vs. C 0.325 (C) 0.292 (C) >1 (-) 62 (-) >0.05
rs9275235 chr6:32660587 HLA-DQB1 [+24427bp] C - 11 A vs. G - - >1 (-) 18 (-) >0.05
rs115911154 chr6:32674194 HLA-DQA2 [-34925bp] C - 10 A vs. G - 0.067 (G) <1 (-) 0 (-) >0.05
rs9275248 chr6:32661135 HLA-DQB1 [+24975bp] C - 12 A vs. G - - >1 (-) 26 (-) >0.05
rs9275386 chr6:32668960 HLA-DQB1 [+32800bp] C - 12 A vs. T 0.325 (T) 0.292 (T) >1 (-) 62 (-) >0.05
rs117296796 chr6:32674192 HLA-DQA2 [-34927bp] C - 10 A vs. G - 0.075 (G) <1 (-) 0 (-) >0.05
rs17427564 chr6:32667067 HLA-DQB1 [+30907bp] C - 11 T vs. C 0.133 (C) 0.017 (C) <1 (-) 74 (-) >0.05
rs9275388 chr6:32669084 HLA-DQB1 [+32924bp] C - 12 T vs. C 0.325 (C) 0.292 (C) >1 (-) 62 (-) >0.05
rs9275250 chr6:32661141 HLA-DQB1 [+24981bp] C - 12 T vs. C - - <1 (-) 25 (-) >0.05
rs9275374 chr6:32668526 HLA-DQB1 [+32366bp] C - 12 T vs. C 0.325 (T) 0.292 (T) <1 (-) 62 (-) >0.05
rs143613923 chr6:32764117 HLA-DOB [-16423bp] C - 5 T vs. C - - >1 (-) 0 (-) >0.05
rs9275379 chr6:32668804 HLA-DQB1 [+32644bp] C - 12 T vs. C 0.325 (T) 0.25 (T) <1 (-) 61 (-) >0.05
rs9275231 chr6:32660505 HLA-DQB1 [+24345bp] C - 12 T vs. C 0.5 (T) 0.458 (T) >1 (-) 23 (-) >0.05
rs56144236 chr6:32720219 MIR3135B [+2463bp] C - 4 A vs. G - 0.075 (A) >1 (-) 0 (-) >0.05
rs9275428 chr6:32670978 HLA-DQB1 [+34818bp] C - 12 A vs. G 0.325 (G) 0.3 (G) >1 (-) 61 (-) >0.05
rs9275384 chr6:32668898 HLA-DQB1 [+32738bp] C - 12 T vs. C 0.325 (C) 0.292 (C) >1 (-) 61 (-) >0.05
rs9275385 chr6:32668917 HLA-DQB1 [+32757bp] C - 12 T vs. C 0.325 (T) 0.292 (T) <1 (-) 61 (-) >0.05
chr6:32731345 chr6:32731345 HLA-DQB2 [+34bp] C - 7 C vs. G - - <1 (-) 0 (-) >0.05
chr6:32731360 chr6:32731360 HLA-DQB2 [+49bp] C - 7 T vs. C - - <1 (-) 0 (-) >0.05
rs34389498 chr6:32666348 HLA-DQB1 [+30188bp] C - 11 T vs. C - - <1 (-) 74 (-) >0.05
rs35678932 chr6:32666863 HLA-DQB1 [+30703bp] C - 11 T vs. G 0.133 (T) - >1 (-) 74 (-) >0.05
rs111848638 chr6:32666630 HLA-DQB1 [+30470bp] C - 11 A vs. T 0.108 (T) 0.033 (T) <1 (-) 74 (-) >0.05
rs113984677 chr6:32666636 HLA-DQB1 [+30476bp] C - 11 A vs. G 0.117 (A) 0.05 (A) >1 (-) 74 (-) >0.05
rs201992526 chr6:32731192 HLA-DQB2 C - 3 A vs. G - - <1 (-) 0 (-) >0.05
rs36062941 chr6:32666051 HLA-DQB1 [+29891bp] C - 11 T vs. C 0.133 (T) 0.033 (T) >1 (-) 74 (-) >0.05
rs6907732 chr6:32671972 HLA-DQB1 [+35812bp] C - 12 T vs. G - - >1 (-) 0 (-) >0.05
rs9275251 chr6:32661146 HLA-DQB1 [+24986bp] C - 11 A vs. C - - >1 (-) 31 (-) >0.05
rs17212581 chr6:32665819 HLA-DQB1 [+29659bp] C - 11 T vs. C 0.117 (C) 0.05 (C) <1 (-) 73 (-) >0.05
rs17212588 chr6:32665820 HLA-DQB1 [+29660bp] C - 11 A vs. G 0.108 (A) 0.033 (A) >1 (-) 73 (-) >0.05
rs9275436 chr6:32671399 HLA-DQB1 [+35239bp] C - 12 C vs. G 0.325 (G) 0.283 (G) >1 (-) 61 (-) >0.05
rs17499411 chr6:32665002 HLA-DQB1 [+28842bp] C - 11 C vs. G 0.133 (G) 0.033 (G) <1 (-) 74 (-) >0.05
rs34593937 chr6:32666271 HLA-DQB1 [+30111bp] C - 11 T vs. C 0.133 (C) 0.042 (C) <1 (-) 74 (-) >0.05
rs35836258 chr6:32666296 HLA-DQB1 [+30136bp] C - 11 A vs. G 0.133 (A) 0.058 (A) >1 (-) 74 (-) >0.05
rs4713580 chr6:32659994 HLA-DQB1 [+23834bp] C - 12 T vs. C 0.492 (C) 0.408 (C) <1 (-) 20 (-) >0.05
rs138256019 chr6:32673055 HLA-DQA2 [-36064bp] C - 10 A vs. G - - <1 (-) 0 (-) >0.05
rs78825896 chr6:32667181 HLA-DQB1 [+31021bp] C - 11 T vs. G 0.108 (G) 0.033 (G) <1 (-) 74 (-) >0.05
rs9275464 chr6:32672082 HLA-DQB1 [+35922bp] C - 12 A vs. G - 0.225 (G) >1 (-) 63 (-) >0.05

Association studies for this region [+]