HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs17212553 chr6:32665687 HLA-DQB1 [+29527bp] C - 11 T vs. G 0.133 (T) 0.033 (T) >1 (-) 74 (-) >0.05
rs9275469 chr6:32672430 HLA-DQB1 [+36270bp] C - 12 A vs. G 0.325 (G) 0.242 (G) >1 (-) 63 (-) >0.05
rs9275468 chr6:32672412 HLA-DQB1 [+36252bp] C - 12 A vs. G 0.325 (A) 0.242 (A) <1 (-) 63 (-) >0.05
rs5002707 chr6:32659337 HLA-DQB1 [+23177bp] C - 11 T vs. C - - >1 (-) 30 (-) >0.05
rs145281025 chr6:32674252 HLA-DQA2 [-34867bp] C - 11 A vs. G - - >1 (-) 72 (-) >0.05
rs71202902 chr6:32667175 HLA-DQB1 [+31015bp] C - 11 T vs. C 0.108 (T) 0.033 (T) >1 (-) 73 (-) >0.05
rs75778474 chr6:32667173 HLA-DQB1 [+31013bp] C - 11 T vs. C 0.092 (T) 0.033 (T) >1 (-) 73 (-) >0.05
rs78043146 chr6:32665826 HLA-DQB1 [+29666bp] C - 11 T vs. G 0.125 (G) - <1 (-) 74 (-) >0.05
rs7764819 chr6:32680576 HLA-DQA2 [-28543bp] C - 11 T vs. G 0.1 (G) 0.158 (G) >1 (-) 0 (-) >0.05
rs141890570 chr6:32667412 HLA-DQB1 [+31252bp] C - 11 A vs. G - - >1 (-) 74 (-) >0.05
rs4713581 chr6:32660023 HLA-DQB1 [+23863bp] C - 12 T vs. C 0.492 (T) 0.433 (T) >1 (-) 19 (-) >0.05
rs66795753 chr6:32667381 HLA-DQB1 [+31221bp] C - 11 C vs. G 0.117 (C) 0.033 (C) >1 (-) 74 (-) >0.05
rs34475663 chr6:32666563 HLA-DQB1 [+30403bp] C - 11 A vs. T 0.133 (A) 0.067 (A) >1 (-) 74 (-) >0.05
rs9275494 chr6:32673479 HLA-DQA2 [-35640bp] C - 12 C vs. G 0.325 (C) 0.208 (C) <1 (-) 64 (-) >0.05
rs9275431 chr6:32671140 HLA-DQB1 [+34980bp] C - 12 A vs. G 0.317 (A) 0.292 (A) <1 (-) 62 (-) >0.05
rs7765379 chr6:32680928 HLA-DQA2 [-28191bp] C - 11 T vs. G 0.1 (G) 0.142 (G) >1 (-) 0 (-) >0.05
rs4713582 chr6:32660051 HLA-DQB1 [+23891bp] C - 12 T vs. C 0.492 (T) 0.45 (T) >1 (-) 19 (-) >0.05
rs17206182 chr6:32665504 HLA-DQB1 [+29344bp] C - 11 T vs. C 0.117 (T) - >1 (-) 74 (-) >0.05
rs115756946 chr6:32753791 HLA-DQB2 [+22480bp] C - 12 T vs. C 0.017 (T) - >1 (-) 0 (-) >0.05
rs17206119 chr6:32665104 HLA-DQB1 [+28944bp] C - 11 A vs. T 0.133 (A) - >1 (-) 75 (-) >0.05
rs17212518 chr6:32665475 HLA-DQB1 [+29315bp] C - 11 A vs. C 0.133 (C) - <1 (-) 74 (-) >0.05
rs4248168 chr6:32659743 HLA-DQB1 [+23583bp] C - 12 C vs. G 0.492 (G) 0.392 (G) <1 (-) 17 (-) >0.05
rs17212462 chr6:32665125 HLA-DQB1 [+28965bp] C - 11 T vs. C 0.133 (T) - >1 (-) 75 (-) >0.05
rs9275492 chr6:32673446 HLA-DQA2 [-35673bp] C - 12 T vs. C 0.308 (T) - <1 (-) 63 (-) >0.05
rs9275309 chr6:32665258 HLA-DQB1 [+29098bp] C - 12 T vs. G 0.333 (T) 0.283 (T) >1 (-) 68 (-) >0.05
rs139464972 chr6:32750596 HLA-DQB2 [+19285bp] C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs10484561 chr6:32665420 HLA-DQB1 [+29260bp] C - 11 T vs. G 0.133 (G) 0.033 (G) <1 (-) 75 (-) >0.05
rs17212469 chr6:32665153 HLA-DQB1 [+28993bp] C - 11 T vs. G 0.133 (T) - >1 (-) 75 (-) >0.05
rs17212483 chr6:32665250 HLA-DQB1 [+29090bp] C - 11 T vs. C 0.133 (T) - >1 (-) 75 (-) >0.05
rs1158784 chr6:32758761 HLA-DOB [-21779bp] C - 12 A vs. T 0.258 (T) 0.367 (T) <1 (-) 0 (-) >0.05
rs9275396 chr6:32669528 HLA-DQB1 [+33368bp] C - 12 A vs. T 0.325 (A) 0.25 (A) <1 (-) 64 (-) >0.05
rs17212504 chr6:32665369 HLA-DQB1 [+29209bp] C - 11 A vs. G 0.133 (G) 0.058 (G) <1 (-) 75 (-) >0.05
rs9275237 chr6:32660612 HLA-DQB1 [+24452bp] C - 11 A vs. C 0.492 (A) 0.467 (C) <1 (-) 26 (-) >0.05
rs9275438 chr6:32671508 HLA-DQB1 [+35348bp] C - 12 T vs. C 0.325 (T) 0.275 (T) <1 (-) 61 (-) >0.05
rs9275439 chr6:32671521 HLA-DQB1 [+35361bp] C - 12 T vs. C 0.325 (C) 0.25 (C) >1 (-) 61 (-) >0.05
rs114325417 chr6:32666222 HLA-DQB1 [+30062bp] C - 11 A vs. C 0.017 (A) 0.075 (A) >1 (-) 0 (-) >0.05
rs112057165 chr6:32677822 HLA-DQA2 [-31297bp] C - 3 T vs. C - 0.017 (C) >1 (-) 19 (-) >0.05
rs115842332 chr6:32666213 HLA-DQB1 [+30053bp] C - 11 A vs. G 0.017 (A) 0.125 (A) >1 (-) 0 (-) >0.05
rs17840170 chr6:32705338 HLA-DQA2 [-3781bp] C - 4 T vs. C - 0.033 (C) >1 (-) 45 (-) >0.05
rs73734654 chr6:32692659 HLA-DQA2 [-16460bp] C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs60829415 chr6:32676697 HLA-DQA2 [-32422bp] C - 8 T vs. C - - <1 (-) 0 (-) >0.05
rs115276762 chr6:32674178 HLA-DQA2 [-34941bp] C - 10 T vs. C - 0.092 (T) >1 (-) 0 (-) >0.05
rs9275227 chr6:32660337 HLA-DQB1 [+24177bp] C - 11 C vs. G 0.483 (G) 0.483 (C) >1 (-) 24 (-) >0.05
rs9275228 chr6:32660347 HLA-DQB1 [+24187bp] C - 11 A vs. G 0.5 (G) 0.492 (G) <1 (-) 24 (-) >0.05
rs36160077 chr6:32666483 HLA-DQB1 [+30323bp] C - 11 T vs. C 0.133 (T) - >1 (-) 74 (-) >0.05
rs36188641 chr6:32666471 HLA-DQB1 [+30311bp] C - 11 A vs. G 0.133 (G) - <1 (-) 74 (-) >0.05
rs116459302 chr6:32666559 HLA-DQB1 [+30399bp] C - 11 T vs. C 0.017 (T) 0.133 (T) >1 (-) 0 (-) >0.05
rs36186647 chr6:32666431 HLA-DQB1 [+30271bp] C - 11 T vs. C 0.133 (T) - >1 (-) 74 (-) >0.05
rs9275224 chr6:32659878 HLA-DQB1 [+23718bp] C - 11 A vs. G 0.492 (A) 0.408 (A) >1 (-) 25 (-) >0.05
rs114169440 chr6:32662921 HLA-DQB1 [+26761bp] C - 3 A vs. C 0.125 (A) 0.033 (A) >1 (-) 0 (-) >0.05

Association studies for this region [+]