HLA-DQB1, chr6:32627244-32636160 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3134976 chr6:32652305 HLA-DQB1 [+16145bp] C - 4 A vs. C 0.283 (A) 0.125 (A) >1 (-) 0 (-) >0.05
rs117773289 chr6:32675292 HLA-DQA2 [-33827bp] C - 10 A vs. G - 0.017 (G) <1 (-) 0 (-) >0.05
rs9275268 chr6:32662433 HLA-DQB1 [+26273bp] C - 12 A vs. G - - >1 (-) 26 (-) >0.05
rs3134997 chr6:32672039 HLA-DQB1 [+35879bp] C - 12 T vs. C - - >1 (-) 32 (-) >0.05
rs2858328 chr6:32658911 HLA-DQB1 [+22751bp] C - 11 T vs. C - - <1 (-) 39 (-) >0.05
rs9274711 chr6:32637289 HLA-DQB1 [+1129bp] C - 4 A vs. T - - >1 (-) 12 (-) >0.05
rs9275353 chr6:32667815 HLA-DQB1 [+31655bp] C - 12 T vs. G 0.275 (G) 0.175 (G) >1 (-) 65 (-) >0.05
rs9275352 chr6:32667807 HLA-DQB1 [+31647bp] C - 12 T vs. C 0.283 (T) 0.275 (T) <1 (-) 65 (-) >0.05
rs3134975 chr6:32652581 HLA-DQB1 [+16421bp] C - 3 T vs. C 0.3 (T) 0.125 (T) >1 (-) 0 (-) >0.05
rs9275487 chr6:32673174 HLA-DQA2 [-35945bp] C - 12 T vs. C - - <1 (-) 59 (-) >0.05
rs9275440 chr6:32671596 HLA-DQB1 [+35436bp] C - 12 T vs. C 0.317 (T) 0.275 (T) <1 (-) 59 (-) >0.05
rs2647006 chr6:32660582 HLA-DQB1 [+24422bp] C - 11 A vs. C 0.475 (C) - >1 (-) 35 (-) >0.05
rs9275267 chr6:32662425 HLA-DQB1 [+26265bp] C - 12 A vs. G - - >1 (-) 27 (-) >0.05
rs9275240 chr6:32660722 HLA-DQB1 [+24562bp] C - 12 T vs. C 0.45 (T) 0.492 (T) <1 (-) 18 (-) >0.05
rs17206378 chr6:32675161 HLA-DQA2 [-33958bp] C - 11 T vs. G 0.133 (T) 0.125 (T) >1 (-) 71 (-) >0.05
rs2647025 chr6:32635949 HLA-DQB1 C - 4 A vs. G 0.308 (A) 0.417 (A) <1 (-) 0 (-) >0.05
rs1281937 chr6:32578143 HLA-DQA1 [-17813bp] C - 5 T vs. C 0.158 (C) 0.392 (C) <1 (-) 0 (-) >0.05
rs35332745 chr6:32674225 HLA-DQA2 [-34894bp] C - 11 T vs. C - - <1 (-) 71 (-) >0.05
rs35472821 chr6:32674529 HLA-DQA2 [-34590bp] C - 11 C vs. G - - >1 (-) 71 (-) >0.05
rs4713586 chr6:32659582 HLA-DQB1 [+23422bp] C - 8 A vs. G 0.017 (G) 0.125 (G) <1 (-) 0 (-) >0.05
rs28533694 chr6:32587235 HLA-DQA1 [-8721bp] C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs9275357 chr6:32667891 HLA-DQB1 [+31731bp] C - 12 A vs. C 0.325 (C) 0.25 (C) >1 (-) 64 (-) >0.05
rs9275241 chr6:32660741 HLA-DQB1 [+24581bp] C - 12 T vs. G 0.458 (T) 0.483 (T) <1 (-) 20 (-) >0.05
rs9275508 chr6:32674159 HLA-DQA2 [-34960bp] C - 12 C vs. G - - >1 (-) 64 (-) >0.05
rs4713588 chr6:32659502 HLA-DQB1 [+23342bp] C - 8 A vs. C - - >1 (-) 0 (-) >0.05
rs9275504 chr6:32673986 HLA-DQA2 [-35133bp] C - 11 T vs. C 0.317 (T) 0.183 (T) <1 (-) 67 (-) >0.05
rs9275249 chr6:32661137 HLA-DQB1 [+24977bp] C - 10 A vs. C 0.3 (C) - >1 (-) 72 (-) >0.05
rs9275234 chr6:32660586 HLA-DQB1 [+24426bp] C - 11 T vs. C - - <1 (-) 15 (-) >0.05
rs35399661 chr6:32590990 HLA-DQA1 [-4966bp] C - 8 T vs. C 0.192 (C) 0.142 (C) <1 (-) 51 (-) >0.05
rs9275222 chr6:32659516 HLA-DQB1 [+23356bp] C - 11 A vs. T - - >1 (-) 29 (-) >0.05
rs113773636 chr6:32673719 HLA-DQA2 [-35400bp] C - 6 C vs. G - 0.133 (G) >1 (-) 22 (-) >0.05
rs9275080 chr6:32648627 HLA-DQB1 [+12467bp] C - 4 T vs. C 0.258 (T) 0.367 (T) <1 (-) 24 (-) >0.05
rs9275079 chr6:32648614 HLA-DQB1 [+12454bp] C - 4 A vs. C 0.258 (C) 0.367 (C) >1 (-) 24 (-) >0.05
rs9274662 chr6:32636494 HLA-DQB1 [+334bp] C - 4 T vs. C 0.45 (T) 0.15 (T) >1 (-) 47 (-) >0.05
rs35120848 chr6:32670495 HLA-DQB1 [+34335bp] C - 11 T vs. C 0.15 (T) 0.167 (T) >1 (-) 55 (-) >0.05
rs17843599 chr6:32620142 HLA-DQA1 [+5303bp] C - 3 A vs. T - - <1 (-) 0 (-) >0.05
rs9274670 chr6:32636597 HLA-DQB1 [+437bp] C - 4 T vs. G 0.483 (G) 0.15 (T) >1 (-) 46 (-) >0.05
rs35424967 chr6:32591129 HLA-DQA1 [-4827bp] C - 8 A vs. G 0.192 (A) 0.142 (A) >1 (-) 50 (-) >0.05
rs10947332 chr6:32677440 HLA-DQA2 [-31679bp] C - 11 A vs. G 0.133 (A) 0.1 (A) >1 (-) 72 (-) >0.05
rs17612816 chr6:32620469 HLA-DQA1 [+5630bp] C - 3 T vs. G 0.483 (G) 0.475 (G) >1 (-) 0 (-) >0.05
rs35014460 chr6:32591106 HLA-DQA1 [-4850bp] C - 8 T vs. C 0.192 (C) 0.142 (C) <1 (-) 50 (-) >0.05
rs200419915 chr6:32662222 HLA-DQB1 [+26062bp] C - 12 T vs. C - - <1 (-) 33 (-) >0.05
rs34709043 chr6:32676486 HLA-DQA2 [-32633bp] C - 11 A vs. C 0.133 (C) 0.108 (C) <1 (-) 71 (-) >0.05
rs17843617 chr6:32620690 HLA-DQA1 [+5851bp] C - 3 T vs. G 0.45 (T) 0.467 (T) <1 (-) 0 (-) >0.05
rs17612831 chr6:32620507 HLA-DQA1 [+5668bp] C - 3 A vs. T 0.425 (T) 0.458 (A) >1 (-) 0 (-) >0.05
rs73728237 chr6:32581628 HLA-DQA1 [-14328bp] C - 3 T vs. C 0.017 (T) 0.117 (T) <1 (-) 9 (-) >0.05
rs6457615 chr6:32651964 HLA-DQB1 [+15804bp] C - 4 T vs. C 0.133 (C) 0.033 (C) >1 (-) 54 (-) >0.05
rs9275247 chr6:32661015 HLA-DQB1 [+24855bp] C - 12 T vs. C 0.458 (C) 0.483 (T) >1 (-) 20 (-) >0.05
rs9275246 chr6:32661003 HLA-DQB1 [+24843bp] C - 12 A vs. C 0.467 (A) 0.425 (C) <1 (-) 20 (-) >0.05
rs9275083 chr6:32648694 HLA-DQB1 [+12534bp] C - 4 T vs. C 0.233 (C) 0.383 (C) >1 (-) 19 (-) >0.05

Association studies for this region [+]