HLA-DQB1, chr6:32627244-32636160 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs17843609 chr6:32620513 HLA-DQA1 [+5674bp] C - 3 T vs. C 0.425 (C) 0.467 (T) >1 (-) 0 (-) >0.05
rs3134970 chr6:32654202 HLA-DQB1 [+18042bp] C - 4 T vs. C 0.292 (T) 0.133 (T) >1 (-) 0 (-) >0.05
rs9275417 chr6:32670214 HLA-DQB1 [+34054bp] C - 12 A vs. C 0.325 (C) 0.292 (C) >1 (-) 61 (-) >0.05
rs9275500 chr6:32673788 HLA-DQA2 [-35331bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs9275499 chr6:32673778 HLA-DQA2 [-35341bp] C - 11 T vs. G - - >1 (-) 71 (-) >0.05
rs9275369 chr6:32668255 HLA-DQB1 [+32095bp] C - 12 T vs. C 0.325 (T) 0.292 (T) <1 (-) 62 (-) >0.05
rs9275370 chr6:32668258 HLA-DQB1 [+32098bp] C - 12 T vs. C 0.325 (T) 0.292 (T) <1 (-) 62 (-) >0.05
rs34455295 chr6:32591183 HLA-DQA1 [-4773bp] C - 8 A vs. G 0.192 (A) 0.142 (A) >1 (-) 51 (-) >0.05
rs11751024 chr6:32586236 HLA-DQA1 [-9720bp] C - 3 A vs. C 0.383 (A) 0.3 (A) <1 (-) 17 (-) >0.05
rs502771 chr6:32578970 HLA-DQA1 [-16986bp] C - 4 T vs. C 0.142 (C) 0.375 (C) <1 (-) 0 (-) >0.05
rs9275520 chr6:32674839 HLA-DQA2 [-34280bp] C - 11 C vs. G - - <1 (-) 70 (-) >0.05
rs502055 chr6:32579003 HLA-DQA1 [-16953bp] C - 4 T vs. C 0.15 (C) 0.383 (C) <1 (-) 0 (-) >0.05
rs3134998 chr6:32636757 HLA-DQB1 [+597bp] C - 4 T vs. C 0.45 (T) 0.167 (T) >1 (-) 51 (-) >0.05
rs34388057 chr6:32675951 HLA-DQA2 [-33168bp] C - 11 A vs. T 0.133 (T) 0.1 (T) <1 (-) 71 (-) >0.05
rs17612809 chr6:32620459 HLA-DQA1 [+5620bp] C - 3 T vs. C 0.492 (T) 0.467 (T) <1 (-) 0 (-) >0.05
rs9274712 chr6:32637298 HLA-DQB1 [+1138bp] C - 4 T vs. C 0.292 (T) 0.475 (T) <1 (-) 20 (-) >0.05
rs17612748 chr6:32620174 HLA-DQA1 [+5335bp] C - 3 A vs. G 0.5 (G) 0.458 (A) >1 (-) 0 (-) >0.05
rs9275243 chr6:32660784 HLA-DQB1 [+24624bp] C - 12 C vs. G 0.458 (G) 0.467 (C) >1 (-) 21 (-) >0.05
rs9274728 chr6:32637772 HLA-DQB1 [+1612bp] C - 4 A vs. G 0.283 (G) 0.425 (G) >1 (-) 31 (-) >0.05
rs34751870 chr6:32673332 HLA-DQA2 [-35787bp] C - 11 T vs. C 0.133 (T) 0.025 (T) >1 (-) 69 (-) >0.05
rs9275254 chr6:32661209 HLA-DQB1 [+25049bp] C - 12 T vs. G 0.433 (G) 0.433 (T) >1 (-) 21 (-) >0.05
rs9275255 chr6:32661246 HLA-DQB1 [+25086bp] C - 12 A vs. T 0.483 (A) 0.417 (T) <1 (-) 21 (-) >0.05
rs9275253 chr6:32661204 HLA-DQB1 [+25044bp] C - 12 T vs. C 0.45 (T) 0.45 (C) <1 (-) 21 (-) >0.05
rs17843608 chr6:32620454 HLA-DQA1 [+5615bp] C - 3 A vs. C 0.467 (C) 0.458 (C) >1 (-) 0 (-) >0.05
rs115035141 chr6:32580032 HLA-DQA1 [-15924bp] C - 3 T vs. C - 0.108 (T) <1 (-) 0 (-) >0.05
rs116714077 chr6:32580019 HLA-DQA1 [-15937bp] C - 3 T vs. C - 0.125 (T) <1 (-) 0 (-) >0.05
rs9275496 chr6:32673714 HLA-DQA2 [-35405bp] C - 12 T vs. C 0.325 (C) 0.225 (C) >1 (-) 63 (-) >0.05
rs3134996 chr6:32636866 HLA-DQB1 [+706bp] C - 4 A vs. T 0.433 (A) 0.167 (A) >1 (-) 53 (-) >0.05
rs9275399 chr6:32669712 HLA-DQB1 [+33552bp] C - 12 A vs. G 0.333 (G) 0.25 (G) >1 (-) 62 (-) >0.05
rs12525220 chr6:32675470 HLA-DQA2 [-33649bp] C - 11 A vs. G 0.017 (A) 0.133 (A) >1 (-) 0 (-) >0.05
rs2647052 chr6:32672032 HLA-DQB1 [+35872bp] C - 12 A vs. G - 0.25 (A) >1 (-) 20 (-) >0.05
rs9275244 chr6:32660881 HLA-DQB1 [+24721bp] C - 12 T vs. G 0.483 (T) 0.417 (G) <1 (-) 20 (-) >0.05
rs9275236 chr6:32660601 HLA-DQB1 [+24441bp] C - 11 A vs. G 0.467 (G) 0.467 (A) >1 (-) 17 (-) >0.05
rs9274691 chr6:32636957 HLA-DQB1 [+797bp] C - 4 T vs. C - - >1 (-) 49 (-) >0.05
rs9272255 chr6:32603133 HLA-DQA1 C - 3 T vs. C 0.15 (T) 0.183 (T) >1 (-) 15 (-) >0.05
rs1626993 chr6:32636991 HLA-DQB1 [+831bp] C - 4 A vs. T - - >1 (-) 50 (-) >0.05
rs112396255 chr6:32591469 HLA-DQA1 [-4487bp] C - 8 A vs. G 0.192 (G) 0.133 (G) <1 (-) 52 (-) >0.05
rs9275238 chr6:32660689 HLA-DQB1 [+24529bp] C - 12 A vs. G - 0.467 (A) >1 (-) 19 (-) >0.05
rs12527228 chr6:32679992 HLA-DQA2 [-29127bp] C - 10 T vs. C 0.017 (T) 0.042 (T) >1 (-) 0 (-) >0.05
rs9275432 chr6:32671185 HLA-DQB1 [+35025bp] C - 12 T vs. G 0.308 (T) 0.292 (T) <1 (-) 61 (-) >0.05
rs9275433 chr6:32671206 HLA-DQB1 [+35046bp] C - 12 C vs. G 0.308 (C) 0.283 (C) <1 (-) 61 (-) >0.05
rs34682574 chr6:32591370 HLA-DQA1 [-4586bp] C - 8 C vs. G 0.183 (G) 0.117 (G) <1 (-) 52 (-) >0.05
rs9275100 chr6:32649308 HLA-DQB1 [+13148bp] C - 5 A vs. G 0.267 (G) 0.367 (G) >1 (-) 0 (-) >0.05
rs9275093 chr6:32649047 HLA-DQB1 [+12887bp] C - 5 T vs. C 0.258 (T) 0.383 (T) <1 (-) 0 (-) >0.05
rs9274692 chr6:32636958 HLA-DQB1 [+798bp] C - 4 A vs. T - - <1 (-) 50 (-) >0.05
rs9275094 chr6:32649062 HLA-DQB1 [+12902bp] C - 5 T vs. C 0.242 (C) 0.383 (C) >1 (-) 0 (-) >0.05
rs28614783 chr6:32582434 HLA-DQA1 [-13522bp] C - 3 T vs. C 0.017 (T) 0.117 (T) <1 (-) 0 (-) >0.05
rs34185260 chr6:32591388 HLA-DQA1 [-4568bp] C - 8 A vs. G 0.183 (G) 0.142 (G) <1 (-) 52 (-) >0.05
rs149005483 chr6:32674166 HLA-DQA2 [-34953bp] C - 10 A vs. T - - <1 (-) 0 (-) >0.05
rs9275392 chr6:32669425 HLA-DQB1 [+33265bp] C - 12 A vs. T 0.325 (T) 0.292 (T) >1 (-) 62 (-) >0.05

Association studies for this region [+]