HLA-DQB1, chr6:32627244-32636160 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275393 chr6:32669439 HLA-DQB1 [+33279bp] C - 12 A vs. G 0.325 (A) 0.292 (A) <1 (-) 62 (-) >0.05
rs112466823 chr6:32660104 HLA-DQB1 [+23944bp] C - 8 T vs. C 0.017 (T) 0.133 (T) >1 (-) 0 (-) >0.05
rs112032264 chr6:32660115 HLA-DQB1 [+23955bp] C - 8 C vs. G 0.017 (C) 0.133 (C) >1 (-) 0 (-) >0.05
rs9275390 chr6:32669156 HLA-DQB1 [+32996bp] C - 12 T vs. C 0.325 (C) 0.283 (C) >1 (-) 61 (-) >0.05
rs9275391 chr6:32669169 HLA-DQB1 [+33009bp] C - 12 T vs. C 0.325 (T) 0.283 (T) <1 (-) 61 (-) >0.05
rs9275096 chr6:32649096 HLA-DQB1 [+12936bp] C - 5 T vs. C 0.267 (T) 0.383 (T) <1 (-) 0 (-) >0.05
rs9272224 chr6:32602352 HLA-DQA1 C - 4 T vs. C 0.15 (T) 0.192 (T) >1 (-) 0 (-) >0.05
rs17612802 chr6:32620359 HLA-DQA1 [+5520bp] C - 3 T vs. C 0.483 (T) 0.458 (T) <1 (-) 0 (-) >0.05
rs80343249 chr6:32580268 HLA-DQA1 [-15688bp] C - 3 A vs. G 0.008 (A) 0.1 (A) <1 (-) 0 (-) >0.05
rs9274693 chr6:32636972 HLA-DQB1 [+812bp] C - 4 T vs. C 0.375 (T) 0.333 (C) <1 (-) 50 (-) >0.05
rs9275418 chr6:32670244 HLA-DQB1 [+34084bp] C - 12 A vs. G 0.325 (G) 0.292 (G) >1 (-) 62 (-) >0.05
rs9274696 chr6:32637007 HLA-DQB1 [+847bp] C - 4 C vs. G - - <1 (-) 51 (-) >0.05
rs9274697 chr6:32637016 HLA-DQB1 [+856bp] C - 4 A vs. G 0.4 (G) 0.333 (A) >1 (-) 51 (-) >0.05
rs9275104 chr6:32649388 HLA-DQB1 [+13228bp] C - 5 T vs. C 0.242 (C) 0.358 (C) >1 (-) 0 (-) >0.05
rs17612788 chr6:32620344 HLA-DQA1 [+5505bp] C - 3 A vs. G 0.433 (A) 0.45 (G) <1 (-) 0 (-) >0.05
rs9272261 chr6:32603242 HLA-DQA1 C - 3 A vs. G 0.15 (A) 0.183 (A) >1 (-) 16 (-) >0.05
rs9275107 chr6:32649508 HLA-DQB1 [+13348bp] C - 5 A vs. G 0.25 (G) 0.367 (G) >1 (-) 0 (-) >0.05
rs9274690 chr6:32636940 HLA-DQB1 [+780bp] C - 4 A vs. C 0.4 (C) 0.342 (A) >1 (-) 51 (-) >0.05
rs9275596 chr6:32681631 HLA-DQA2 [-27488bp] C - 12 T vs. C 0.367 (C) 0.167 (C) <1 (-) 28 (-) >0.05
rs17843607 chr6:32620435 HLA-DQA1 [+5596bp] C - 3 A vs. G 0.492 (A) 0.442 (G) <1 (-) 0 (-) >0.05
rs1612904 chr6:32669018 HLA-DQB1 [+32858bp] C - 12 A vs. C 0.375 (C) 0.158 (C) <1 (-) 30 (-) >0.05
rs34575141 chr6:32626697 HLA-DQB1 [-547bp] C - 3 A vs. G 0.025 (A) 0.058 (A) >1 (-) 0 (-) >0.05
rs4713589 chr6:32659435 HLA-DQB1 [+23275bp] C - 11 A vs. G - - <1 (-) 40 (-) >0.05
rs9271529 chr6:32589937 HLA-DQA1 [-6019bp] C - 8 A vs. G - - >1 (-) 58 (-) >0.05
rs9275407 chr6:32670037 HLA-DQB1 [+33877bp] C - 12 T vs. G 0.325 (T) 0.292 (T) <1 (-) 62 (-) >0.05
rs9274683 chr6:32636780 HLA-DQB1 [+620bp] C - 4 A vs. G 0.433 (A) 0.342 (G) <1 (-) 51 (-) >0.05
rs9274684 chr6:32636785 HLA-DQB1 [+625bp] C - 4 T vs. C 0.442 (T) 0.342 (C) <1 (-) 51 (-) >0.05
rs9275217 chr6:32658867 HLA-DQB1 [+22707bp] C - 11 A vs. G - - >1 (-) 30 (-) >0.05
rs3104412 chr6:32585967 HLA-DQA1 [-9989bp] C - 3 A vs. G 0.4 (G) 0.45 (A) >1 (-) 49 (-) >0.05
rs9275232 chr6:32660574 HLA-DQB1 [+24414bp] C - 12 A vs. C 0.442 (A) 0.492 (C) <1 (-) 19 (-) >0.05
rs9274689 chr6:32636930 HLA-DQB1 [+770bp] C - 4 T vs. C 0.433 (C) 0.333 (T) >1 (-) 52 (-) >0.05
rs9275497 chr6:32673726 HLA-DQA2 [-35393bp] C - 12 A vs. G 0.317 (G) 0.242 (G) >1 (-) 63 (-) >0.05
rs9275242 chr6:32660774 HLA-DQB1 [+24614bp] C - 12 T vs. C 0.492 (T) 0.458 (C) <1 (-) 24 (-) >0.05
rs71565344 chr6:32673965 HLA-DQA2 [-35154bp] C - 11 A vs. G - - >1 (-) 71 (-) >0.05
rs9271187 chr6:32578314 HLA-DQA1 [-17642bp] C - 5 T vs. C - - <1 (-) 0 (-) >0.05
rs9274735 chr6:32637896 HLA-DQB1 [+1736bp] C - 4 A vs. G 0.225 (A) 0.333 (A) <1 (-) 37 (-) >0.05
rs2858864 chr6:32578229 HLA-DQA1 [-17727bp] C - 5 T vs. C 0.142 (T) 0.383 (T) >1 (-) 0 (-) >0.05
rs9275371 chr6:32668296 HLA-DQB1 [+32136bp] C - 12 T vs. C 0.325 (C) 0.292 (C) >1 (-) 63 (-) >0.05
rs36233210 chr6:32577417 HLA-DQA1 [-18539bp] C - 4 T vs. G 0.15 (G) 0.025 (G) >1 (-) 29 (-) >0.05
rs9271190 chr6:32578369 HLA-DQA1 [-17587bp] C - 5 A vs. C 0.142 (A) 0.383 (A) >1 (-) 0 (-) >0.05
rs17843611 chr6:32620531 HLA-DQA1 [+5692bp] C - 3 T vs. C - - >1 (-) 0 (-) >0.05
rs9274685 chr6:32636844 HLA-DQB1 [+684bp] C - 4 T vs. C 0.433 (C) 0.342 (T) >1 (-) 51 (-) >0.05
rs9275245 chr6:32660943 HLA-DQB1 [+24783bp] C - 12 A vs. G 0.492 (A) 0.408 (A) >1 (-) 20 (-) >0.05
rs17843610 chr6:32620529 HLA-DQA1 [+5690bp] C - 3 T vs. C - - >1 (-) 0 (-) >0.05
rs115262684 chr6:32666235 HLA-DQB1 [+30075bp] C - 11 A vs. G - 0.1 (A) >1 (-) 0 (-) >0.05
rs17612774 chr6:32620286 HLA-DQA1 [+5447bp] C - 3 T vs. C 0.45 (C) 0.442 (C) >1 (-) 0 (-) >0.05
rs17843604 chr6:32620283 HLA-DQA1 [+5444bp] C - 3 T vs. C 0.442 (T) 0.433 (T) <1 (-) 0 (-) >0.05
rs9275423 chr6:32670564 HLA-DQB1 [+34404bp] C - 12 T vs. G 0.325 (T) 0.275 (T) <1 (-) 62 (-) >0.05
rs9275441 chr6:32671676 HLA-DQB1 [+35516bp] C - 12 A vs. C 0.317 (A) 0.267 (A) <1 (-) 61 (-) >0.05
rs9275485 chr6:32673077 HLA-DQA2 [-36042bp] C - 12 A vs. G - - <1 (-) 62 (-) >0.05

Association studies for this region [+]