HLA-DQB1, chr6:32627244-32636160 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs67887332 chr6:32664399 HLA-DQB1 [+28239bp] C - 11 A vs. G 0.133 (A) 0.05 (A) >1 (-) 75 (-) >0.05
rs4711304 chr6:32660170 HLA-DQB1 [+24010bp] C - 11 T vs. C 0.492 (T) 0.458 (T) >1 (-) 27 (-) >0.05
rs4713583 chr6:32660153 HLA-DQB1 [+23993bp] C - 11 T vs. G 0.492 (T) 0.417 (T) >1 (-) 27 (-) >0.05
rs9272230 chr6:32602602 HLA-DQA1 C - 4 A vs. C 0.125 (A) 0.117 (A) >1 (-) 0 (-) >0.05
rs9275427 chr6:32670915 HLA-DQB1 [+34755bp] C - 12 T vs. C 0.317 (T) 0.292 (T) <1 (-) 60 (-) >0.05
rs72848254 chr6:32601375 HLA-DQA1 C - 3 A vs. G 0.183 (G) 0.275 (G) >1 (-) 41 (-) >0.05
rs9272233 chr6:32602686 HLA-DQA1 C - 4 A vs. G 0.142 (A) 0.092 (A) >1 (-) 0 (-) >0.05
rs9274726 chr6:32637593 HLA-DQB1 [+1433bp] C - 4 C vs. G 0.45 (G) 0.317 (C) >1 (-) 61 (-) >0.05
rs9272234 chr6:32602691 HLA-DQA1 C - 4 A vs. G 0.133 (A) 0.092 (A) >1 (-) 0 (-) >0.05
rs9272243 chr6:32602857 HLA-DQA1 C - 4 A vs. G - - <1 (-) 10 (-) >0.05
rs9275225 chr6:32660262 HLA-DQB1 [+24102bp] C - 11 A vs. G 0.475 (A) 0.45 (G) <1 (-) 28 (-) >0.05
rs35725597 chr6:32659112 HLA-DQB1 [+22952bp] C - 8 T vs. C 0.133 (T) - >1 (-) 68 (-) >0.05
rs114744294 chr6:32660866 HLA-DQB1 [+24706bp] C - 8 A vs. G - 0.083 (G) <1 (-) 0 (-) >0.05
rs112357706 chr6:32685344 HLA-DQA2 [-23775bp] C - 7 T vs. C 0.008 (C) - >1 (-) 26 (-) >0.05
rs1794278 chr6:32667628 HLA-DQB1 [+31468bp] C - 8 T vs. C - - >1 (-) 0 (-) >0.05
rs72848256 chr6:32601531 HLA-DQA1 C - 3 A vs. G 0.158 (G) 0.258 (G) >1 (-) 40 (-) >0.05
rs9272249 chr6:32602952 HLA-DQA1 C - 3 A vs. T 0.117 (A) 0.167 (A) >1 (-) 21 (-) >0.05
rs9272246 chr6:32602903 HLA-DQA1 C - 4 C vs. G 0.133 (C) 0.108 (C) >1 (-) 2 (-) >0.05
rs9274720 chr6:32637479 HLA-DQB1 [+1319bp] C - 4 A vs. G - - <1 (-) 61 (-) >0.05
rs12528365 chr6:32653608 HLA-DQB1 [+17448bp] C - 6 T vs. C - - >1 (-) 12 (-) >0.05
rs5002704 chr6:32659279 HLA-DQB1 [+23119bp] C - 11 T vs. C - - >1 (-) 37 (-) >0.05
rs146335245 chr6:32662357 HLA-DQB1 [+26197bp] C - 6 T vs. C - - <1 (-) 0 (-) >0.05
rs34918548 chr6:32666142 HLA-DQB1 [+29982bp] C - 11 A vs. G 0.125 (G) - <1 (-) 75 (-) >0.05
rs1794281 chr6:32666817 HLA-DQB1 [+30657bp] C - 8 A vs. G 0.033 (G) 0.058 (G) <1 (-) 0 (-) >0.05
rs9272247 chr6:32602924 HLA-DQA1 C - 4 A vs. G 0.133 (A) 0.108 (A) >1 (-) 3 (-) >0.05
rs73728598 chr6:32601447 HLA-DQA1 C - 3 A vs. G 0.108 (G) 0.258 (G) >1 (-) 41 (-) >0.05
rs4713587 chr6:32659535 HLA-DQB1 [+23375bp] C - 11 T vs. G 0.492 (G) - <1 (-) 28 (-) >0.05
rs9272248 chr6:32602941 HLA-DQA1 C - 4 A vs. G 0.117 (A) 0.075 (A) >1 (-) 7 (-) >0.05
rs114651315 chr6:32601278 HLA-DQA1 C - 3 T vs. C 0.133 (T) 0.267 (T) <1 (-) 42 (-) >0.05
rs3892710 chr6:32682862 HLA-DQA2 [-26257bp] C - 11 T vs. C 0.167 (T) 0.067 (T) <1 (-) 0 (-) >0.05
rs113721192 chr6:32682590 HLA-DQA2 [-26529bp] C - 4 A vs. G 0.008 (A) 0.042 (A) <1 (-) 0 (-) >0.05
rs34605008 chr6:32666135 HLA-DQB1 [+29975bp] C - 11 T vs. C - - <1 (-) 75 (-) >0.05
rs113861133 chr6:32601911 HLA-DQA1 C - 3 A vs. C - - >1 (-) 55 (-) >0.05
rs1620150 chr6:32637798 HLA-DQB1 [+1638bp] C - 4 T vs. C 0.467 (C) 0.358 (T) >1 (-) 63 (-) >0.05
rs17206175 chr6:32665495 HLA-DQB1 [+29335bp] C - 11 A vs. C 0.117 (A) - >1 (-) 74 (-) >0.05
rs35740559 chr6:32666132 HLA-DQB1 [+29972bp] C - 11 T vs. C - - >1 (-) 75 (-) >0.05
rs9275375 chr6:32668632 HLA-DQB1 [+32472bp] C - 12 A vs. G 0.325 (A) 0.292 (A) <1 (-) 66 (-) >0.05
rs111335405 chr6:32655722 HLA-DQB1 [+19562bp] C - 8 A vs. G 0.017 (G) 0.117 (G) <1 (-) 0 (-) >0.05
rs34214702 chr6:32666081 HLA-DQB1 [+29921bp] C - 11 A vs. C - - >1 (-) 73 (-) >0.05
rs9275376 chr6:32668633 HLA-DQB1 [+32473bp] C - 12 T vs. G 0.325 (T) 0.25 (T) <1 (-) 66 (-) >0.05
rs72848251 chr6:32601288 HLA-DQA1 C - 3 A vs. G 0.133 (A) 0.258 (A) <1 (-) 43 (-) >0.05
rs1794529 chr6:32672383 HLA-DQB1 [+36223bp] C - 8 C vs. G 0.033 (C) 0.075 (C) >1 (-) 0 (-) >0.05
rs114948848 chr6:32664797 HLA-DQB1 [+28637bp] C - 11 A vs. G 0.133 (G) 0.017 (G) <1 (-) 75 (-) >0.05
rs115074443 chr6:32664795 HLA-DQB1 [+28635bp] C - 11 T vs. C 0.133 (T) 0.042 (T) >1 (-) 75 (-) >0.05
rs115785636 chr6:32664775 HLA-DQB1 [+28615bp] C - 11 C vs. G 0.133 (C) - >1 (-) 75 (-) >0.05
rs5002708 chr6:32659357 HLA-DQB1 [+23197bp] C - 11 T vs. C - - >1 (-) 37 (-) >0.05
rs115594945 chr6:32664771 HLA-DQB1 [+28611bp] C - 11 A vs. G 0.133 (A) - >1 (-) 75 (-) >0.05
rs17427445 chr6:32663764 HLA-DQB1 [+27604bp] C - 11 A vs. G 0.133 (A) 0.025 (A) >1 (-) 76 (-) >0.05
rs35473146 chr6:32663713 HLA-DQB1 [+27553bp] C - 11 A vs. G 0.133 (G) 0.033 (G) <1 (-) 76 (-) >0.05
rs115580594 chr6:32673569 HLA-DQA2 [-35550bp] C - 11 A vs. G 0.133 (G) 0.15 (G) <1 (-) 73 (-) >0.05

Association studies for this region [+]