HLA-DQB1, chr6:32627244-32636160 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2647089 chr6:32681568 HLA-DQA2 [-27551bp] C - 11 T vs. C 0.183 (C) 0.367 (C) <1 (-) 33 (-) >0.05
rs13194877 chr6:32655548 HLA-DQB1 [+19388bp] C - 8 A vs. G 0.133 (A) 0.033 (A) >1 (-) 71 (-) >0.05
rs114801596 chr6:32663093 HLA-DQB1 [+26933bp] C - 5 T vs. G - 0.092 (G) <1 (-) 0 (-) >0.05
rs2858333 chr6:32681085 HLA-DQA2 [-28034bp] C - 11 A vs. G 0.183 (G) 0.367 (G) <1 (-) 34 (-) >0.05
rs115328288 chr6:32661335 HLA-DQB1 [+25175bp] C - 9 A vs. G 0.017 (G) 0.117 (G) <1 (-) 0 (-) >0.05
rs9272178 chr6:32601427 HLA-DQA1 C - 3 C vs. G 0.142 (G) 0.108 (G) <1 (-) 0 (-) >0.05
rs114895478 chr6:32661440 HLA-DQB1 [+25280bp] C - 9 A vs. T 0.008 (T) 0.125 (T) <1 (-) 0 (-) >0.05
rs115962869 chr6:32661432 HLA-DQB1 [+25272bp] C - 9 T vs. G 0.008 (G) 0.125 (G) <1 (-) 0 (-) >0.05
rs2647087 chr6:32681049 HLA-DQA2 [-28070bp] C - 11 A vs. C 0.183 (C) 0.367 (C) <1 (-) 33 (-) >0.05
rs7745656 chr6:32680970 HLA-DQA2 [-28149bp] C - 11 T vs. G 0.183 (T) 0.367 (T) >1 (-) 33 (-) >0.05
rs1794523 chr6:32659192 HLA-DQB1 [+23032bp] C - 6 A vs. C 0.025 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs17427599 chr6:32667364 HLA-DQB1 [+31204bp] C - 11 T vs. C 0.208 (T) 0.208 (T) >1 (-) 68 (-) >0.05
rs3916766 chr6:32681645 HLA-DQA2 [-27474bp] C - 11 A vs. T 0.183 (A) 0.367 (A) >1 (-) 31 (-) >0.05
rs28371347 chr6:32680537 HLA-DQA2 [-28582bp] C - 11 T vs. C 0.192 (C) 0.358 (C) <1 (-) 31 (-) >0.05
rs28371346 chr6:32680532 HLA-DQA2 [-28587bp] C - 11 T vs. C 0.192 (C) 0.358 (C) <1 (-) 31 (-) >0.05
rs2858332 chr6:32681161 HLA-DQA2 [-27958bp] C - 12 T vs. G 0.492 (T) 0.392 (G) <1 (-) 24 (-) >0.05
rs9501184 chr6:32680199 HLA-DQA2 [-28920bp] C - 11 A vs. G 0.183 (A) 0.35 (A) >1 (-) 30 (-) >0.05
rs112608098 chr6:32665270 HLA-DQB1 [+29110bp] C - 11 A vs. C 0.017 (A) 0.133 (A) >1 (-) 0 (-) >0.05
rs9272181 chr6:32601563 HLA-DQA1 C - 3 A vs. G 0.133 (A) 0.108 (A) >1 (-) 0 (-) >0.05
rs1049225 chr6:32627747 HLA-DQB1 C - 6 A vs. G 0.275 (A) 0.125 (A) >1 (-) 34 (-) >0.05
rs2395521 chr6:32601700 HLA-DQA1 C - 3 T vs. C 0.142 (T) 0.083 (T) >1 (-) 0 (-) >0.05
rs9272260 chr6:32603236 HLA-DQA1 C - 3 A vs. T 0.133 (A) 0.108 (A) >1 (-) 41 (-) >0.05
rs112317305 chr6:32667199 HLA-DQB1 [+31039bp] C - 11 T vs. C 0.008 (C) 0.108 (C) <1 (-) 0 (-) >0.05
rs73396649 chr6:32682928 HLA-DQA2 [-26191bp] C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs9272188 chr6:32601688 HLA-DQA1 C - 3 C vs. G 0.142 (G) 0.067 (G) <1 (-) 0 (-) >0.05
rs72844343 chr6:32660993 HLA-DQB1 [+24833bp] C - 8 A vs. T 0.117 (T) - <1 (-) 70 (-) >0.05
rs116098592 chr6:32681820 HLA-DQA2 [-27299bp] C - 8 T vs. C 0.033 (T) 0.075 (T) >1 (-) 0 (-) >0.05
rs116953562 chr6:32676388 HLA-DQA2 [-32731bp] C - 4 A vs. G - 0.017 (G) <1 (-) 18 (-) >0.05
rs2647085 chr6:32680124 HLA-DQA2 [-28995bp] C - 11 T vs. C 0.167 (C) 0.367 (C) <1 (-) 33 (-) >0.05
rs9272173 chr6:32601268 HLA-DQA1 C - 3 T vs. C 0.15 (C) 0.067 (C) <1 (-) 0 (-) >0.05
rs9272184 chr6:32601617 HLA-DQA1 C - 3 T vs. C 0.142 (C) 0.067 (C) <1 (-) 0 (-) >0.05
rs9274741 chr6:32637994 HLA-DQB1 [+1834bp] C - 4 T vs. C 0.467 (C) 0.192 (T) >1 (-) 65 (-) >0.05
rs583177 chr6:32579567 HLA-DQA1 [-16389bp] C - 4 A vs. C 0.142 (A) 0.375 (A) >1 (-) 0 (-) >0.05
rs9391744 chr6:32680227 HLA-DQA2 [-28892bp] C - 11 T vs. C 0.183 (T) 0.367 (T) >1 (-) 31 (-) >0.05
rs7774434 chr6:32657578 HLA-DQB1 [+21418bp] C - 10 T vs. C 0.433 (C) 0.492 (C) >1 (-) 23 (-) >0.05
rs17581425 chr6:32680585 HLA-DQA2 [-28534bp] C - 11 T vs. C 0.2 (C) 0.358 (C) <1 (-) 33 (-) >0.05
rs9272176 chr6:32601333 HLA-DQA1 C - 3 T vs. C 0.142 (T) 0.05 (T) >1 (-) 0 (-) >0.05
rs28746919 chr6:32649806 HLA-DQB1 [+13646bp] C - 4 A vs. G 0.125 (A) 0.283 (A) >1 (-) 63 (-) >0.05
rs9272264 chr6:32603309 HLA-DQA1 C - 3 A vs. G 0.133 (G) 0.108 (G) <1 (-) 46 (-) >0.05
rs2858326 chr6:32659607 HLA-DQB1 [+23447bp] C - 6 A vs. G 0.033 (A) 0.058 (A) >1 (-) 0 (-) >0.05
rs28746923 chr6:32649849 HLA-DQB1 [+13689bp] C - 4 A vs. G 0.133 (G) 0.267 (G) <1 (-) 63 (-) >0.05
rs9274745 chr6:32638058 HLA-DQB1 [+1898bp] C - 4 T vs. C - - <1 (-) 63 (-) >0.05
rs28746924 chr6:32649854 HLA-DQB1 [+13694bp] C - 4 A vs. G 0.133 (A) 0.275 (A) >1 (-) 63 (-) >0.05
rs3104420 chr6:32580028 HLA-DQA1 [-15928bp] C - 4 A vs. G 0.142 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs9275658 chr6:32685989 HLA-DQA2 [-23130bp] C - 11 C vs. G 0.35 (C) 0.25 (G) >1 (-) 22 (-) >0.05
rs28746922 chr6:32649844 HLA-DQB1 [+13684bp] C - 4 A vs. G 0.15 (G) 0.275 (G) <1 (-) 63 (-) >0.05
rs9273493 chr6:32628247 HLA-DQB1 C - 5 T vs. C 0.45 (T) 0.425 (T) >1 (-) 34 (-) >0.05
rs17205640 chr6:32637413 HLA-DQB1 [+1253bp] C - 4 A vs. T - - <1 (-) 68 (-) >0.05
rs112802378 chr6:32675358 HLA-DQA2 [-33761bp] C - 4 T vs. C - 0.033 (T) >1 (-) 20 (-) >0.05
rs5024432 chr6:32684468 HLA-DQA2 [-24651bp] C - 10 T vs. C 0.075 (T) 0.067 (T) <1 (-) 0 (-) >0.05

Association studies for this region [+]