HLA-DQB1, chr6:32627244-32636160 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9271412 chr6:32587685 HLA-DQA1 [-8271bp] C - 4 T vs. C 0.133 (T) 0.217 (T) <1 (-) 0 (-) >0.05
rs17205907 chr6:32651649 HLA-DQB1 [+15489bp] C - 6 A vs. G 0.167 (G) 0.325 (G) <1 (-) 48 (-) >0.05
rs9271417 chr6:32587818 HLA-DQA1 [-8138bp] C - 4 T vs. C 0.125 (C) 0.217 (C) >1 (-) 0 (-) >0.05
rs2858304 chr6:32671044 HLA-DQB1 [+34884bp] C - 12 T vs. G 0.258 (T) 0.467 (T) <1 (-) 36 (-) >0.05
rs2856704 chr6:32671014 HLA-DQB1 [+34854bp] C - 12 A vs. C 0.267 (A) 0.467 (A) <1 (-) 36 (-) >0.05
rs117891841 chr6:32683501 HLA-DQA2 [-25618bp] C - 5 T vs. C - 0.058 (C) >1 (-) 0 (-) >0.05
rs2856664 chr6:32665616 HLA-DQB1 [+29456bp] C - 12 T vs. G 0.267 (T) 0.5 (T) <1 (-) 43 (-) >0.05
rs17840121 chr6:32577693 HLA-DQA1 [-18263bp] C - 8 C vs. G 0.133 (C) 0.033 (C) <1 (-) 0 (-) >0.05
rs28747066 chr6:32656817 HLA-DQB1 [+20657bp] C - 9 A vs. G 0.075 (A) - >1 (-) 15 (-) >0.05
rs13206219 chr6:32577847 HLA-DQA1 [-18109bp] C - 8 T vs. G 0.117 (T) - <1 (-) 0 (-) >0.05
rs9271424 chr6:32587922 HLA-DQA1 [-8034bp] C - 4 T vs. C 0.125 (C) 0.208 (C) >1 (-) 0 (-) >0.05
rs73734325 chr6:32685298 HLA-DQA2 [-23821bp] C - 10 A vs. T 0.042 (A) - >1 (-) 0 (-) >0.05
rs3104364 chr6:32603968 HLA-DQA1 C - 3 A vs. G 0.458 (A) 0.425 (A) >1 (-) 17 (-) >0.05
rs2856674 chr6:32659645 HLA-DQB1 [+23485bp] C - 6 A vs. G 0.1 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs2647004 chr6:32659609 HLA-DQB1 [+23449bp] C - 6 T vs. C 0.1 (C) - <1 (-) 0 (-) >0.05
rs2647092 chr6:32584440 HLA-DQA1 [-11516bp] C - 4 T vs. C 0.117 (T) 0.242 (T) >1 (-) 0 (-) >0.05
rs2856726 chr6:32666721 HLA-DQB1 [+30561bp] C - 12 A vs. T 0.258 (T) 0.475 (T) >1 (-) 43 (-) >0.05
rs13206639 chr6:32578100 HLA-DQA1 [-17856bp] C - 8 A vs. G 0.125 (A) 0.033 (A) <1 (-) 0 (-) >0.05
rs28483633 chr6:32624874 HLA-DQB1 [-2370bp] C - 3 A vs. C - 0.067 (A) >1 (-) 0 (-) >0.05
rs562462 chr6:32586437 HLA-DQA1 [-9519bp] C - 4 T vs. C - - <1 (-) 0 (-) >0.05
rs3129733 chr6:32685456 HLA-DQA2 [-23663bp] C - 10 A vs. G 0.158 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs17212279 chr6:32651713 HLA-DQB1 [+15553bp] C - 6 A vs. G 0.175 (G) 0.292 (G) <1 (-) 48 (-) >0.05
rs9271425 chr6:32587923 HLA-DQA1 [-8033bp] C - 4 A vs. G 0.125 (G) 0.208 (G) >1 (-) 0 (-) >0.05
rs9271437 chr6:32588166 HLA-DQA1 [-7790bp] C - 4 A vs. G 0.133 (A) 0.217 (A) <1 (-) 0 (-) >0.05
rs28629976 chr6:32625221 HLA-DQB1 [-2023bp] C - 3 T vs. C 0.025 (C) 0.283 (C) <1 (-) 0 (-) >0.05
rs2856718 chr6:32670255 HLA-DQB1 [+34095bp] C - 12 T vs. C 0.267 (T) 0.467 (T) <1 (-) 35 (-) >0.05
rs3957147 chr6:32682135 HLA-DQA2 [-26984bp] C - 10 T vs. C 0.117 (T) 0.05 (T) >1 (-) 0 (-) >0.05
rs3129734 chr6:32685503 HLA-DQA2 [-23616bp] C - 10 T vs. C 0.15 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs17211818 chr6:32636963 HLA-DQB1 [+803bp] C - 3 A vs. C 0.092 (A) 0.1 (A) >1 (-) 35 (-) >0.05
rs2856696 chr6:32651868 HLA-DQB1 [+15708bp] C - 6 A vs. T 0.075 (T) - >1 (-) 0 (-) >0.05
rs28371262 chr6:32658733 HLA-DQB1 [+22573bp] C - 4 T vs. C 0.075 (T) - <1 (-) 0 (-) >0.05
rs2856719 chr6:32669926 HLA-DQB1 [+33766bp] C - 12 C vs. G 0.267 (G) 0.467 (G) >1 (-) 36 (-) >0.05
rs9272207 chr6:32601966 HLA-DQA1 C - 3 T vs. C 0.258 (C) - <1 (-) 48 (-) >0.05
rs9271439 chr6:32588234 HLA-DQA1 [-7722bp] C - 4 A vs. G 0.133 (G) - >1 (-) 0 (-) >0.05
rs28479136 chr6:32625051 HLA-DQB1 [-2193bp] C - 3 A vs. G - 0.45 (G) >1 (-) 0 (-) >0.05
rs3104398 chr6:32685685 HLA-DQA2 [-23434bp] C - 10 A vs. G 0.117 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs3021175 chr6:32651404 HLA-DQB1 [+15244bp] C - 6 T vs. C 0.075 (C) 0.167 (C) >1 (-) 0 (-) >0.05
rs28371286 chr6:32675994 HLA-DQA2 [-33125bp] C - 12 T vs. C 0.258 (T) - <1 (-) 34 (-) >0.05
rs28772271 chr6:32656901 HLA-DQB1 [+20741bp] C - 9 T vs. C - - <1 (-) 16 (-) >0.05
rs9272105 chr6:32599999 HLA-DQA1 C - 4 A vs. G 0.408 (A) 0.475 (A) >1 (-) 0 (-) >0.05
rs9271300 chr6:32581582 HLA-DQA1 [-14374bp] C - 4 C vs. G 0.433 (G) 0.383 (G) >1 (-) 0 (-) >0.05
rs17212748 chr6:32675266 HLA-DQA2 [-33853bp] C - 12 T vs. C 0.258 (T) 0.383 (T) <1 (-) 36 (-) >0.05
rs9272104 chr6:32599918 HLA-DQA1 C - 4 T vs. C 0.408 (C) 0.475 (C) <1 (-) 0 (-) >0.05
rs17212223 chr6:32651540 HLA-DQB1 [+15380bp] C - 4 T vs. C 0.142 (T) 0.083 (T) >1 (-) 64 (-) >0.05
rs9271471 chr6:32588665 HLA-DQA1 [-7291bp] C - 4 C vs. G 0.133 (G) 0.225 (G) >1 (-) 0 (-) >0.05
rs28371306 chr6:32677751 HLA-DQA2 [-31368bp] C - 12 T vs. C 0.267 (C) 0.392 (C) >1 (-) 34 (-) >0.05
rs9271462 chr6:32588501 HLA-DQA1 [-7455bp] C - 4 T vs. C 0.133 (C) - >1 (-) 0 (-) >0.05
rs28747037 chr6:32655336 HLA-DQB1 [+19176bp] C - 9 T vs. C 0.042 (C) 0.217 (C) <1 (-) 3 (-) >0.05
rs28371297 chr6:32677315 HLA-DQA2 [-31804bp] C - 12 T vs. C 0.267 (C) 0.392 (C) >1 (-) 35 (-) >0.05
rs28371298 chr6:32677321 HLA-DQA2 [-31798bp] C - 12 A vs. C 0.267 (C) 0.367 (C) >1 (-) 35 (-) >0.05

Association studies for this region [+]