HLA-DQB1, chr6:32627244-32636160 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs28371328 chr6:32679216 HLA-DQA2 [-29903bp] C - 12 A vs. G 0.25 (A) 0.358 (A) <1 (-) 34 (-) >0.05
rs9271460 chr6:32588463 HLA-DQA1 [-7493bp] C - 4 A vs. G 0.108 (A) - <1 (-) 0 (-) >0.05
rs2646996 chr6:32665741 HLA-DQB1 [+29581bp] C - 12 A vs. G 0.258 (G) 0.492 (G) >1 (-) 42 (-) >0.05
rs28371307 chr6:32677761 HLA-DQA2 [-31358bp] C - 12 A vs. G 0.275 (G) 0.392 (G) >1 (-) 34 (-) >0.05
rs28371329 chr6:32679236 HLA-DQA2 [-29883bp] C - 12 A vs. G 0.267 (A) 0.375 (A) <1 (-) 34 (-) >0.05
rs3998154 chr6:32685380 HLA-DQA2 [-23739bp] C - 12 A vs. G 0.383 (A) 0.317 (G) >1 (-) 25 (-) >0.05
rs28747065 chr6:32656806 HLA-DQB1 [+20646bp] C - 9 T vs. C 0.058 (C) - <1 (-) 16 (-) >0.05
rs17205782 chr6:32651051 HLA-DQB1 [+14891bp] C - 5 T vs. C 0.133 (T) 0.242 (T) >1 (-) 54 (-) >0.05
rs28371321 chr6:32678894 HLA-DQA2 [-30225bp] C - 12 A vs. T 0.25 (A) 0.392 (A) <1 (-) 34 (-) >0.05
rs17581326 chr6:32678753 HLA-DQA2 [-30366bp] C - 12 A vs. G 0.267 (G) 0.383 (G) >1 (-) 34 (-) >0.05
rs28371318 chr6:32678740 HLA-DQA2 [-30379bp] C - 12 A vs. G 0.267 (G) 0.383 (G) >1 (-) 34 (-) >0.05
rs28371320 chr6:32678877 HLA-DQA2 [-30242bp] C - 12 T vs. C 0.267 (C) 0.383 (C) >1 (-) 34 (-) >0.05
rs17581404 chr6:32679518 HLA-DQA2 [-29601bp] C - 12 A vs. G 0.267 (G) 0.383 (G) >1 (-) 34 (-) >0.05
rs3104397 chr6:32685673 HLA-DQA2 [-23446bp] C - 10 A vs. G 0.15 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs28371292 chr6:32676299 HLA-DQA2 [-32820bp] C - 12 T vs. C 0.258 (C) 0.367 (C) >1 (-) 35 (-) >0.05
rs17205775 chr6:32651047 HLA-DQB1 [+14887bp] C - 5 A vs. G 0.133 (G) 0.283 (G) <1 (-) 54 (-) >0.05
rs28371293 chr6:32677099 HLA-DQA2 [-32020bp] C - 11 A vs. T 0.267 (A) 0.383 (A) <1 (-) 39 (-) >0.05
rs17212650 chr6:32674869 HLA-DQA2 [-34250bp] C - 12 T vs. C 0.267 (T) 0.4 (T) <1 (-) 35 (-) >0.05
rs28371317 chr6:32678634 HLA-DQA2 [-30485bp] C - 12 T vs. C 0.242 (C) 0.383 (C) >1 (-) 34 (-) >0.05
rs28746937 chr6:32651401 HLA-DQB1 [+15241bp] C - 7 T vs. C 0.183 (T) 0.292 (T) >1 (-) 40 (-) >0.05
rs28755383 chr6:32676393 HLA-DQA2 [-32726bp] C - 12 C vs. G 0.275 (G) 0.383 (G) >1 (-) 35 (-) >0.05
rs28755384 chr6:32676398 HLA-DQA2 [-32721bp] C - 12 T vs. C 0.275 (C) 0.383 (C) >1 (-) 35 (-) >0.05
rs17206392 chr6:32675171 HLA-DQA2 [-33948bp] C - 12 T vs. C 0.267 (T) 0.383 (T) <1 (-) 35 (-) >0.05
rs9271484 chr6:32588905 HLA-DQA1 [-7051bp] C - 4 T vs. G 0.142 (T) 0.183 (T) <1 (-) 0 (-) >0.05
rs28747056 chr6:32656544 HLA-DQB1 [+20384bp] C - 9 A vs. G 0.108 (G) 0.25 (G) <1 (-) 15 (-) >0.05
rs28755391 chr6:32678002 HLA-DQA2 [-31117bp] C - 12 T vs. C 0.25 (T) 0.383 (T) <1 (-) 34 (-) >0.05
rs17212818 chr6:32675449 HLA-DQA2 [-33670bp] C - 12 T vs. C 0.25 (C) 0.383 (C) >1 (-) 36 (-) >0.05
rs28746936 chr6:32651393 HLA-DQB1 [+15233bp] C - 7 A vs. G 0.175 (A) 0.308 (A) >1 (-) 40 (-) >0.05
rs17615293 chr6:32679489 HLA-DQA2 [-29630bp] C - 12 A vs. C 0.267 (C) 0.367 (C) >1 (-) 34 (-) >0.05
rs28371315 chr6:32678388 HLA-DQA2 [-30731bp] C - 12 T vs. C 0.267 (C) 0.392 (C) >1 (-) 34 (-) >0.05
rs17206343 chr6:32675032 HLA-DQA2 [-34087bp] C - 12 T vs. C 0.25 (T) 0.383 (T) <1 (-) 36 (-) >0.05
rs28371316 chr6:32678502 HLA-DQA2 [-30617bp] C - 12 A vs. G 0.258 (G) 0.375 (G) >1 (-) 34 (-) >0.05
rs28371305 chr6:32677690 HLA-DQA2 [-31429bp] C - 12 T vs. G 0.275 (G) 0.392 (G) >1 (-) 35 (-) >0.05
rs28371323 chr6:32679059 HLA-DQA2 [-30060bp] C - 12 A vs. T 0.258 (A) 0.342 (A) <1 (-) 34 (-) >0.05
rs9271492 chr6:32589122 HLA-DQA1 [-6834bp] C - 4 A vs. C 0.217 (C) 0.342 (C) >1 (-) 0 (-) >0.05
rs17212657 chr6:32674903 HLA-DQA2 [-34216bp] C - 12 T vs. C 0.267 (C) 0.408 (C) >1 (-) 36 (-) >0.05
rs17581305 chr6:32677353 HLA-DQA2 [-31766bp] C - 12 A vs. G 0.225 (A) 0.367 (A) <1 (-) 35 (-) >0.05
rs17212720 chr6:32675207 HLA-DQA2 [-33912bp] C - 12 T vs. C 0.267 (T) 0.383 (T) <1 (-) 35 (-) >0.05
rs17219239 chr6:32675511 HLA-DQA2 [-33608bp] C - 12 C vs. G 0.258 (G) 0.383 (G) >1 (-) 35 (-) >0.05
rs17212832 chr6:32675497 HLA-DQA2 [-33622bp] C - 12 T vs. C 0.258 (C) 0.383 (C) >1 (-) 35 (-) >0.05
rs17212881 chr6:32675709 HLA-DQA2 [-33410bp] C - 12 A vs. C 0.258 (C) 0.383 (C) >1 (-) 35 (-) >0.05
rs17212867 chr6:32675691 HLA-DQA2 [-33428bp] C - 12 A vs. G 0.258 (A) 0.383 (A) <1 (-) 35 (-) >0.05
rs28371330 chr6:32679283 HLA-DQA2 [-29836bp] C - 12 T vs. C 0.267 (T) 0.358 (T) <1 (-) 33 (-) >0.05
rs17206371 chr6:32675147 HLA-DQA2 [-33972bp] C - 12 T vs. C 0.267 (T) 0.383 (T) <1 (-) 35 (-) >0.05
rs17212804 chr6:32675416 HLA-DQA2 [-33703bp] C - 12 T vs. C 0.25 (T) 0.383 (T) <1 (-) 36 (-) >0.05
rs28371285 chr6:32675929 HLA-DQA2 [-33190bp] C - 12 T vs. C 0.258 (T) 0.267 (T) <1 (-) 36 (-) >0.05
rs12181270 chr6:32685894 HLA-DQA2 [-23225bp] C - 12 C vs. G 0.35 (C) 0.325 (G) >1 (-) 18 (-) >0.05
rs28747055 chr6:32656476 HLA-DQB1 [+20316bp] C - 9 A vs. G 0.117 (A) 0.317 (A) >1 (-) 15 (-) >0.05
rs9272179 chr6:32601451 HLA-DQA1 C - 3 T vs. C 0.317 (C) 0.45 (C) <1 (-) 31 (-) >0.05
rs9272180 chr6:32601461 HLA-DQA1 C - 3 T vs. C 0.325 (T) 0.45 (T) >1 (-) 31 (-) >0.05

Association studies for this region [+]