HLA-DQB1, chr6:32627244-32636160 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs28383256 chr6:32585675 HLA-DQA1 [-10281bp] C - 4 C vs. G 0.108 (C) - >1 (-) 0 (-) >0.05
rs28383255 chr6:32585641 HLA-DQA1 [-10315bp] C - 4 A vs. G 0.117 (A) - >1 (-) 0 (-) >0.05
rs35900428 chr6:32591755 HLA-DQA1 [-4201bp] C - 8 A vs. G 0.142 (A) - >1 (-) 68 (-) >0.05
rs28383254 chr6:32585638 HLA-DQA1 [-10318bp] C - 4 A vs. C 0.117 (C) - <1 (-) 0 (-) >0.05
rs5004279 chr6:32582406 HLA-DQA1 [-13550bp] C - 4 C vs. G 0.283 (C) 0.467 (G) >1 (-) 0 (-) >0.05
rs28383245 chr6:32584479 HLA-DQA1 [-11477bp] C - 4 T vs. C 0.1 (C) - <1 (-) 0 (-) >0.05
rs28752535 chr6:32585104 HLA-DQA1 [-10852bp] C - 4 C vs. G 0.133 (G) - <1 (-) 0 (-) >0.05
rs28383246 chr6:32584482 HLA-DQA1 [-11474bp] C - 4 A vs. G 0.117 (A) - >1 (-) 0 (-) >0.05
rs28383247 chr6:32584525 HLA-DQA1 [-11431bp] C - 4 A vs. G 0.125 (A) - >1 (-) 0 (-) >0.05
rs28383248 chr6:32585489 HLA-DQA1 [-10467bp] C - 4 A vs. G 0.125 (A) - >1 (-) 0 (-) >0.05
rs28383262 chr6:32585773 HLA-DQA1 [-10183bp] C - 4 A vs. T 0.133 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs28383228 chr6:32583993 HLA-DQA1 [-11963bp] C - 4 A vs. T 0.133 (A) 0.025 (A) >1 (-) 0 (-) >0.05
rs28383252 chr6:32585574 HLA-DQA1 [-10382bp] C - 4 T vs. C 0.117 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs113702169 chr6:32666374 HLA-DQB1 [+30214bp] C - 8 A vs. C - - <1 (-) 21 (-) >0.05
rs28383227 chr6:32583982 HLA-DQA1 [-11974bp] C - 4 A vs. G 0.133 (A) 0.017 (A) >1 (-) 0 (-) >0.05
rs28383261 chr6:32585741 HLA-DQA1 [-10215bp] C - 4 T vs. C 0.108 (C) - <1 (-) 0 (-) >0.05
rs28383232 chr6:32584108 HLA-DQA1 [-11848bp] C - 4 T vs. C 0.117 (T) - >1 (-) 0 (-) >0.05
rs28752518 chr6:32584588 HLA-DQA1 [-11368bp] C - 4 A vs. G 0.125 (G) - <1 (-) 0 (-) >0.05
rs28752517 chr6:32584583 HLA-DQA1 [-11373bp] C - 4 A vs. T 0.125 (A) - >1 (-) 0 (-) >0.05
rs28371271 chr6:32674343 HLA-DQA2 [-34776bp] C - 12 A vs. G 0.275 (A) 0.458 (G) >1 (-) 47 (-) >0.05
rs28383253 chr6:32585589 HLA-DQA1 [-10367bp] C - 4 T vs. C 0.1 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs28383225 chr6:32583824 HLA-DQA1 [-12132bp] C - 4 T vs. C 0.133 (C) - <1 (-) 0 (-) >0.05
rs9271278 chr6:32581016 HLA-DQA1 [-14940bp] C - 4 A vs. G - - <1 (-) 0 (-) >0.05
rs28752524 chr6:32584862 HLA-DQA1 [-11094bp] C - 4 A vs. G 0.117 (A) - >1 (-) 0 (-) >0.05
rs28752525 chr6:32584868 HLA-DQA1 [-11088bp] C - 4 C vs. G 0.117 (C) - >1 (-) 0 (-) >0.05
rs12192620 chr6:32674318 HLA-DQA2 [-34801bp] C - 12 A vs. G 0.283 (A) 0.492 (G) >1 (-) 47 (-) >0.05
rs75786451 chr6:32664646 HLA-DQB1 [+28486bp] C - 8 T vs. C - 0.042 (C) >1 (-) 20 (-) >0.05
rs116283121 chr6:32685649 HLA-DQA2 [-23470bp] C - 6 A vs. G - - <1 (-) 8 (-) >0.05
rs9271328 chr6:32582548 HLA-DQA1 [-13408bp] C - 4 A vs. G 0.308 (G) 0.475 (A) <1 (-) 0 (-) >0.05
rs28752513 chr6:32583459 HLA-DQA1 [-12497bp] C - 4 A vs. C 0.133 (C) - <1 (-) 0 (-) >0.05
rs12203586 chr6:32679591 HLA-DQA2 [-29528bp] C - 12 C vs. G 0.267 (C) 0.35 (C) <1 (-) 31 (-) >0.05
rs28383229 chr6:32584024 HLA-DQA1 [-11932bp] C - 4 A vs. G 0.117 (G) 0.008 (G) <1 (-) 0 (-) >0.05
rs9272142 chr6:32600800 HLA-DQA1 C - 5 C vs. G - - >1 (-) 0 (-) >0.05
rs138987885 chr6:32677418 HLA-DQA2 [-31701bp] C - 6 A vs. G - - <1 (-) 20 (-) >0.05
rs13204933 chr6:32583026 HLA-DQA1 [-12930bp] C - 4 A vs. G 0.133 (G) - <1 (-) 0 (-) >0.05
rs16898264 chr6:32677152 HLA-DQA2 [-31967bp] C - 11 A vs. G 0.267 (A) 0.392 (A) >1 (-) 34 (-) >0.05
rs62404159 chr6:32661150 HLA-DQB1 [+24990bp] C - 3 A vs. G 0.075 (G) - >1 (-) 19 (-) >0.05
rs9272218 chr6:32602238 HLA-DQA1 C - 4 T vs. C 0.408 (T) 0.433 (T) >1 (-) 29 (-) >0.05
rs1794274 chr6:32672043 HLA-DQB1 [+35883bp] C - 8 T vs. G - - >1 (-) 0 (-) >0.05
rs3129716 chr6:32657436 HLA-DQB1 [+21276bp] C - 3 T vs. C 0.1 (C) - >1 (-) 54 (-) >0.05
rs13204672 chr6:32582796 HLA-DQA1 [-13160bp] C - 4 A vs. G 0.133 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs9272141 chr6:32600797 HLA-DQA1 C - 5 A vs. C - - <1 (-) 18 (-) >0.05
rs17212160 chr6:32651097 HLA-DQB1 [+14937bp] C - 7 T vs. G 0.142 (G) 0.308 (G) <1 (-) 36 (-) >0.05
rs3129713 chr6:32657255 HLA-DQB1 [+21095bp] C - 10 T vs. C 0.075 (T) 0.283 (T) >1 (-) 5 (-) >0.05
rs17205114 chr6:32602196 HLA-DQA1 C - 5 T vs. G 0.25 (G) 0.267 (G) >1 (-) 70 (-) >0.05
rs34145408 chr6:32602124 HLA-DQA1 C - 5 T vs. C 0.25 (T) 0.258 (T) <1 (-) 70 (-) >0.05
rs7775228 chr6:32658079 HLA-DQB1 [+21919bp] C - 10 T vs. C 0.092 (C) 0.308 (C) <1 (-) 4 (-) >0.05
rs9272239 chr6:32602778 HLA-DQA1 C - 5 A vs. G - - <1 (-) 59 (-) >0.05
rs1794520 chr6:32662338 HLA-DQB1 [+26178bp] C - 7 A vs. T 0.1 (A) - >1 (-) 0 (-) >0.05
rs9272143 chr6:32600803 HLA-DQA1 C - 5 T vs. C - - >1 (-) 16 (-) >0.05

Association studies for this region [+]