HLA-DQB2, chr6:32723875-32731311 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275503 chr6:32673931 HLA-DQA2 [-35188bp] All: C 99,286 13 G vs. A 0.175 (G) - 0.78 (0.73-0.84) 0 (0-56) 1.84e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275503 chr6:32673931 HLA-DQA2 [-35188bp] All: C 99,286 13 G vs. A 0.175 (G) - 0.78 (0.73-0.84) 0 (0-56) 1.84e-12
rs9275583 chr6:32680299 HLA-DQA2 [-28820bp] All: C 99,286 13 A vs. G 0.175 (A) 0.083 (A) 0.82 (0.78-0.87) 2 (0-58) 2.11e-12
rs4273728 chr6:32678491 HLA-DQA2 [-30628bp] All: C 99,286 13 C vs. T 0.15 (C) 0.083 (C) 0.82 (0.78-0.87) 3 (0-58) 2.41e-12
rs3957146 chr6:32681530 HLA-DQA2 [-27589bp] All: C 99,286 13 C vs. T 0.175 (C) 0.083 (C) 0.82 (0.78-0.87) 0 (0-57) 2.94e-12
rs9275592 chr6:32680620 HLA-DQA2 [-28499bp] All: C 99,286 13 T vs. G 0.175 (T) 0.083 (T) 0.82 (0.78-0.87) 3 (0-58) 3.07e-12
rs9275532 chr6:32675634 HLA-DQA2 [-33485bp] All: C 99,286 13 G vs. C 0.175 (G) 0.083 (G) 0.82 (0.78-0.87) 0 (0-55) 3.91e-12
rs9275541 chr6:32676159 HLA-DQA2 [-32960bp] All: C 99,286 13 G vs. C 0.175 (G) 0.058 (G) 0.82 (0.78-0.87) 0 (0-55) 4.25e-12
rs9275530 chr6:32675523 HLA-DQA2 [-33596bp] All: C 99,286 13 C vs. G 0.175 (C) 0.075 (C) 0.82 (0.78-0.87) 0 (0-55) 5.35e-12
rs7454108 chr6:32681483 HLA-DQA2 [-27636bp] All: C 99,286 13 C vs. T 0.175 (C) 0.083 (C) 0.82 (0.78-0.87) 1 (0-57) 5.64e-12
rs9275546 chr6:32676445 HLA-DQA2 [-32674bp] All: C 99,286 13 G vs. T 0.308 (G) 0.242 (G) 0.82 (0.78-0.87) 2 (0-57) 7.81e-12
rs3957148 chr6:32682137 HLA-DQA2 [-26982bp] All: C 99,286 13 G vs. A 0.175 (G) 0.092 (G) 0.83 (0.78-0.87) 4 (0-58) 1.37e-11
rs3998159 chr6:32682019 HLA-DQA2 [-27100bp] All: C 99,286 13 C vs. A 0.175 (C) 0.083 (C) 0.83 (0.78-0.87) 2 (0-58) 1.39e-11
rs9275599 chr6:32682429 HLA-DQA2 [-26690bp] All: C 99,286 13 T vs. C 0.15 (T) 0.042 (T) 0.82 (0.77-0.87) 5 (0-59) 3.15e-11
rs3873448 chr6:32683055 HLA-DQA2 [-26064bp] All: C 103,235 14 T vs. C 0.133 (T) - 0.85 (0.81-0.90) 0 (0-53) 4.79e-09
rs3873452 chr6:32683309 HLA-DQA2 [-25810bp] All: C 103,235 14 C vs. G 0.133 (C) 0.167 (C) 0.85 (0.81-0.90) 0 (0-54) 1.97e-08
rs3873453 chr6:32683382 HLA-DQA2 [-25737bp] All: C 103,235 14 C vs. T - - 1.16 (1.10-1.23) 0 (0-36) 2.13e-08
rs9275611 chr6:32683763 HLA-DQA2 [-25356bp] All: C 103,235 14 A vs. G 0.142 (A) 0.158 (A) 0.87 (0.82-0.91) 0 (0-43) 3.62e-08
rs9275642 chr6:32684935 HLA-DQA2 [-24184bp] All: C 103,235 14 C vs. T - - 1.14 (1.09-1.19) 0 (0-46) 4.22e-08
rs3873451 chr6:32683240 HLA-DQA2 [-25879bp] All: C 103,235 14 A vs. G - - 1.16 (1.10-1.22) 0 (0-50) 8.44e-08
rs9275641 chr6:32684919 HLA-DQA2 [-24200bp] All: C 99,286 13 C vs. T - - 1.12 (1.07-1.18) 0 (0-48) 4.61e-07
rs7738118 chr6:32684957 HLA-DQA2 [-24162bp] All: C 99,286 13 A vs. G 0.208 (A) 0.217 (A) 0.89 (0.85-0.93) 0 (0-55) 5.24e-07
rs9275608 chr6:32683708 HLA-DQA2 [-25411bp] All: C 103,235 14 G vs. A 0.142 (G) 0.225 (G) 0.88 (0.84-0.92) 0 (0-42) 5.26e-07
rs7738119 chr6:32684959 HLA-DQA2 [-24160bp] All: C 99,286 13 A vs. G 0.217 (A) 0.217 (A) 0.89 (0.85-0.93) 0 (0-55) 5.42e-07
rs9275610 chr6:32683750 HLA-DQA2 [-25369bp] All: C 103,235 14 C vs. T 0.142 (C) 0.242 (C) 0.88 (0.84-0.93) 0 (0-42) 6.77e-07
rs9275638 chr6:32684760 HLA-DQA2 [-24359bp] All: C 103,235 14 C vs. T - - 1.13 (1.08-1.19) 0 (0-40) 7.45e-07
rs6916779 chr6:32684317 HLA-DQA2 [-24802bp] All: C 103,235 14 C vs. T 0.142 (C) 0.233 (C) 0.88 (0.84-0.93) 0 (0-40) 9.53e-07
rs6457636 chr6:32684513 HLA-DQA2 [-24606bp] All: C 103,235 14 A vs. G 0.2 (A) 0.3 (A) 0.88 (0.84-0.93) 0 (0-40) 9.61e-07
rs5024431 chr6:32684344 HLA-DQA2 [-24775bp] All: C 103,235 14 A vs. G 0.217 (A) 0.3 (A) 0.91 (0.87-0.94) 0 (0-43) 1.09e-06
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
rs9275509 chr6:32674251 HLA-DQA2 [-34868bp] All: C 103,235 14 G vs. T - - 1.11 (1.06-1.16) 62 (32-79) 1.28e-05
rs116309362 chr6:32754876 HLA-DQB2 [+23565bp] All: C 103,235 14 C vs. T 0.042 (C) - 0.78 (0.70-0.88) 0 (0-54) 2.41e-05
rs9275563 chr6:32677912 HLA-DQA2 [-31207bp] All: C 103,235 14 T vs. C 0.45 (T) 0.442 (T) 0.94 (0.91-0.97) 0 (0-46) 1.23e-04
rs9275639 chr6:32684831 HLA-DQA2 [-24288bp] C - 12 A vs. T - - >1 (-) 0 (-) <0.05
rs28724890 chr6:32741844 HLA-DQB2 [+10533bp] All: C 55,164 7 A vs. G 0.025 (A) - 1.32 (1.14-1.53) 67 (26-85) 2.27e-04
rs9275640 chr6:32684890 HLA-DQA2 [-24229bp] C - 11 T vs. C - - >1 (-) 0 (-) <0.05
rs3998158 chr6:32681992 HLA-DQA2 [-27127bp] All: C 99,286 13 C vs. T 0.317 (C) 0.183 (C) 0.93 (0.89-0.97) 64 (36-80) 2.99e-04
rs3997854 chr6:32682915 HLA-DQA2 [-26204bp] C - 12 T vs. G 0.142 (G) 0.117 (G) >1 (-) 0 (-) <0.05
rs9275614 chr6:32684257 HLA-DQA2 [-24862bp] C - 12 A vs. G 0.142 (G) 0.175 (G) >1 (-) 0 (-) <0.05
rs9275609 chr6:32683713 HLA-DQA2 [-25406bp] C - 12 C vs. G 0.142 (G) 0.225 (G) >1 (-) 0 (-) <0.05
rs9275618 chr6:32684387 HLA-DQA2 [-24732bp] C - 12 A vs. G 0.142 (G) 0.175 (G) >1 (-) 0 (-) <0.05
rs6936863 chr6:32684029 HLA-DQA2 [-25090bp] C - 12 C vs. G 0.217 (G) 0.3 (G) >1 (-) 0 (-) <0.05
rs3916765 chr6:32685550 HLA-DQA2 [-23569bp] C - 12 A vs. G 0.142 (A) 0.125 (A) <1 (-) 0 (-) <0.05
rs9275615 chr6:32684272 HLA-DQA2 [-24847bp] C - 11 A vs. T 0.142 (A) 0.175 (A) <1 (-) 0 (-) <0.05
rs9276434 chr6:32712666 HLA-DQA2 C - 3 T vs. C 0.15 (C) 0.0 (C) <1 (-) 51 (-) <0.05
rs9275531 chr6:32675592 HLA-DQA2 [-33527bp] All: C 103,235 14 G vs. A 0.308 (G) 0.2 (G) 0.93 (0.89-0.97) 64 (35-80) 5.22e-04
rs9275585 chr6:32680350 HLA-DQA2 [-28769bp] All: C 99,286 13 C vs. T 0.308 (C) 0.2 (C) 0.93 (0.90-0.97) 67 (41-82) 5.68e-04
rs9275586 chr6:32680376 HLA-DQA2 [-28743bp] All: C 99,286 13 T vs. G 0.3 (T) 0.2 (T) 0.93 (0.90-0.97) 67 (41-82) 5.71e-04
rs9275593 chr6:32680843 HLA-DQA2 [-28276bp] All: C 99,286 13 A vs. G 0.317 (A) 0.2 (A) 0.93 (0.90-0.97) 67 (41-82) 6.67e-04
rs9275590 chr6:32680480 HLA-DQA2 [-28639bp] All: C 99,286 13 C vs. T 0.308 (C) 0.192 (C) 0.94 (0.90-0.97) 67 (41-82) 7.18e-04
rs9275595 chr6:32681355 HLA-DQA2 [-27764bp] All: C 99,286 13 C vs. T 0.308 (C) 0.2 (C) 0.94 (0.90-0.97) 66 (39-81) 7.97e-04

Association studies for this region [+]