HLA-DQB2, chr6:32723875-32731311 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275503 chr6:32673931 HLA-DQA2 [-35188bp] All: C 99,286 13 G vs. A 0.175 (G) - 0.78 (0.73-0.84) 0 (0-56) 1.84e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6941902 chr6:32684630 HLA-DQA2 [-24489bp] C - 3 T vs. C 0.058 (C) 0.058 (C) >1 (-) 0 (-) >0.05
rs117505369 chr6:32773916 HLA-DOB [-6624bp] C - 8 A vs. C - 0.058 (A) >1 (-) 0 (-) >0.05
rs117094765 chr6:32714385 HLA-DQA2 C - 3 T vs. G - 0.05 (T) >1 (-) 0 (-) >0.05
rs117472605 chr6:32751006 HLA-DQB2 [+19695bp] C - 5 T vs. C - 0.058 (C) <1 (-) 0 (-) >0.05
rs9276503 chr6:32719731 MIR3135B [+1975bp] C - 11 A vs. T 0.083 (A) - <1 (-) 20 (-) >0.05
rs13217824 chr6:32756953 HLA-DOB [-23587bp] C - 12 T vs. G - - <1 (-) 0 (-) >0.05
rs5014411 chr6:32719634 MIR3135B [+1878bp] C - 11 C vs. G 0.083 (G) - >1 (-) 20 (-) >0.05
rs13201932 chr6:32756950 HLA-DOB [-23590bp] C - 12 C vs. G - - >1 (-) 0 (-) >0.05
rs114254641 chr6:32744301 HLA-DQB2 [+12990bp] C - 9 A vs. C - - <1 (-) 0 (-) >0.05
rs7772569 chr6:32705981 HLA-DQA2 [-3138bp] C - 11 A vs. G 0.35 (A) 0.2 (G) >1 (-) 13 (-) >0.05
chr6:32731730 chr6:32731730 HLA-DQB2 [+419bp] C - 9 A vs. G - - <1 (-) 13 (-) >0.05
rs28893553 chr6:32750421 HLA-DQB2 [+19110bp] C - 11 T vs. C 0.092 (C) - >1 (-) 0 (-) >0.05
rs9276459 chr6:32716034 HLA-DQA2 [+1042bp] C - 11 T vs. C 0.092 (C) - >1 (-) 17 (-) >0.05
chr6:32744307 chr6:32744307 HLA-DQB2 [+12996bp] C - 9 A vs. G - - <1 (-) 0 (-) >0.05
rs28987082 chr6:32750424 HLA-DQB2 [+19113bp] C - 11 A vs. C - - >1 (-) 0 (-) >0.05
rs5021451 chr6:32708063 HLA-DQA2 [-1056bp] C - 11 A vs. T 0.35 (T) 0.233 (A) <1 (-) 11 (-) >0.05
rs9276284 chr6:32702629 HLA-DQA2 [-6490bp] C - 10 A vs. T 0.308 (A) 0.15 (A) <1 (-) 1 (-) >0.05
rs116125777 chr6:32744136 HLA-DQB2 [+12825bp] C - 12 T vs. G 0.033 (G) 0.033 (G) >1 (-) 0 (-) >0.05
rs9275553 chr6:32676988 HLA-DQA2 [-32131bp] C - 9 T vs. G - - <1 (-) 0 (-) >0.05
rs5021449 chr6:32707806 HLA-DQA2 [-1313bp] C - 11 T vs. C 0.35 (C) 0.192 (T) <1 (-) 11 (-) >0.05
rs2051599 chr6:32709346 HLA-DQA2 C - 11 T vs. C 0.35 (C) 0.292 (T) <1 (-) 7 (-) >0.05
rs9276458 chr6:32716000 HLA-DQA2 [+1008bp] C - 11 A vs. T 0.083 (A) - <1 (-) 17 (-) >0.05
rs3129741 chr6:32687102 HLA-DQA2 [-22017bp] C - 12 A vs. G 0.308 (G) 0.125 (G) >1 (-) 0 (-) >0.05
rs9276457 chr6:32715993 HLA-DQA2 [+1001bp] C - 11 T vs. C 0.083 (T) - <1 (-) 17 (-) >0.05
rs114267026 chr6:32731756 HLA-DQB2 [+445bp] C - 6 A vs. G - - <1 (-) 2 (-) >0.05
rs3129740 chr6:32686921 HLA-DQA2 [-22198bp] C - 12 A vs. G 0.3 (G) 0.183 (G) >1 (-) 1 (-) >0.05
rs5014415 chr6:32719439 MIR3135B [+1683bp] C - 11 T vs. C 0.083 (T) - <1 (-) 17 (-) >0.05
rs5014414 chr6:32719440 MIR3135B [+1684bp] C - 11 A vs. G 0.083 (G) - >1 (-) 17 (-) >0.05
rs9276464 chr6:32716294 HLA-DQA2 [+1302bp] C - 11 T vs. C 0.083 (T) - <1 (-) 17 (-) >0.05
rs2395254 chr6:32716837 MIR3135B [-852bp] C - 11 T vs. C 0.083 (C) - >1 (-) 16 (-) >0.05
rs5014418 chr6:32719381 MIR3135B [+1625bp] C - 11 A vs. C 0.083 (C) - >1 (-) 17 (-) >0.05
rs2894291 chr6:32716827 MIR3135B [-862bp] C - 11 T vs. C 0.083 (C) - >1 (-) 14 (-) >0.05
rs2621378 chr6:32763040 HLA-DOB [-17500bp] C - 11 A vs. G 0.408 (G) 0.25 (G) >1 (-) 15 (-) >0.05
rs4415152 chr6:32717024 MIR3135B [-665bp] C - 11 T vs. C 0.083 (C) - >1 (-) 16 (-) >0.05
rs9276439 chr6:32714603 HLA-DQA2 C - 11 T vs. C 0.083 (T) - <1 (-) 16 (-) >0.05
rs9275766 chr6:32689362 HLA-DQA2 [-19757bp] C - 10 A vs. G 0.075 (G) - >1 (-) 0 (-) >0.05
rs28986375 chr6:32752206 HLA-DQB2 [+20895bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs28986376 chr6:32752209 HLA-DQB2 [+20898bp] C - 12 A vs. T 0.092 (A) - >1 (-) 0 (-) >0.05
rs9276449 chr6:32715653 HLA-DQA2 [+661bp] C - 11 T vs. C 0.083 (T) - <1 (-) 16 (-) >0.05
rs9276465 chr6:32716409 MIR3135B [-1280bp] C - 11 A vs. G 0.083 (G) - >1 (-) 17 (-) >0.05
rs3129744 chr6:32687294 HLA-DQA2 [-21825bp] C - 12 T vs. G 0.3 (G) 0.158 (G) >1 (-) 2 (-) >0.05
rs9275668 chr6:32686661 HLA-DQA2 [-22458bp] C - 12 A vs. T 0.3 (A) 0.167 (A) <1 (-) 0 (-) >0.05
rs9276453 chr6:32715775 HLA-DQA2 [+783bp] C - 11 C vs. G 0.083 (C) - <1 (-) 17 (-) >0.05
rs4585553 chr6:32716736 MIR3135B [-953bp] C - 11 A vs. G 0.083 (G) - >1 (-) 17 (-) >0.05
rs2894287 chr6:32707282 HLA-DQA2 [-1837bp] C - 11 A vs. G 0.308 (G) 0.192 (A) <1 (-) 11 (-) >0.05
rs9276520 chr6:32720415 MIR3135B [+2659bp] C - 11 T vs. C 0.075 (T) - <1 (-) 0 (-) >0.05
rs141274380 chr6:32776136 HLA-DOB [-4404bp] C - 8 T vs. C - - <1 (-) 0 (-) >0.05
rs9276484 chr6:32718452 MIR3135B [+696bp] C - 11 A vs. G 0.083 (G) - >1 (-) 17 (-) >0.05
rs4351242 chr6:32717722 MIR3135B C - 11 T vs. C 0.083 (T) - <1 (-) 17 (-) >0.05
rs4370403 chr6:32717515 MIR3135B [-174bp] C - 11 A vs. G 0.083 (A) - <1 (-) 17 (-) >0.05

Association studies for this region [+]