HLA-DQB2, chr6:32723875-32731311 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275503 chr6:32673931 HLA-DQA2 [-35188bp] All: C 99,286 13 G vs. A 0.175 (G) - 0.78 (0.73-0.84) 0 (0-56) 1.84e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275582 chr6:32680070 HLA-DQA2 [-29049bp] All: C 99,286 13 T vs. C 0.308 (T) 0.2 (T) 0.94 (0.90-0.97) 67 (42-82) 8.28e-04
rs9275571 chr6:32678847 HLA-DQA2 [-30272bp] All: C 103,235 14 G vs. T 0.308 (G) 0.242 (G) 0.94 (0.90-0.97) 64 (36-80) 8.31e-04
rs9275580 chr6:32679462 HLA-DQA2 [-29657bp] All: C 103,235 14 G vs. A 0.308 (G) 0.233 (G) 0.94 (0.90-0.97) 64 (36-80) 9.54e-04
rs9275561 chr6:32677789 HLA-DQA2 [-31330bp] All: C 103,235 14 T vs. C 0.308 (T) 0.242 (T) 0.94 (0.90-0.98) 64 (37-80) 0.001
rs9275544 chr6:32676353 HLA-DQA2 [-32766bp] All: C 103,235 14 G vs. A 0.308 (G) 0.233 (G) 0.94 (0.90-0.98) 64 (36-80) 0.001
rs28583593 chr6:32695514 HLA-DQA2 [-13605bp] C - 3 T vs. C - - >1 (-) 87 (-) <0.05
rs3104410 chr6:32683324 HLA-DQA2 [-25795bp] C - 10 T vs. C 0.383 (C) 0.067 (C) <1 (-) 0 (-) <0.05
rs7764856 chr6:32680640 HLA-DQA2 [-28479bp] C - 11 A vs. T 0.408 (A) 0.35 (A) <1 (-) 62 (-) <0.05
rs9276610 chr6:32742095 HLA-DQB2 [+10784bp] C - 12 A vs. T 0.15 (A) - >1 (-) 41 (-) <0.05
rs3104405 chr6:32682308 HLA-DQA2 [-26811bp] C - 11 A vs. C 0.333 (C) 0.317 (C) <1 (-) 9 (-) <0.05
rs2071479 chr6:32781112 HLA-DOB C - 10 T vs. C 0.058 (T) 0.058 (T) <1 (-) 0 (-) <0.05
rs112269159 chr6:32698924 HLA-DQA2 [-10195bp] C - 6 T vs. G - 0.033 (G) >1 (-) 81 (-) <0.05
rs77487028 chr6:32698969 HLA-DQA2 [-10150bp] C - 6 A vs. G 0.008 (G) 0.033 (G) >1 (-) 81 (-) <0.05
rs28724895 chr6:32766482 HLA-DOB [-14058bp] All: C 103,235 14 C vs. T 0.033 (C) - 1.17 (1.04-1.32) 46 (0-71) 0.007
rs58327373 chr6:32757589 HLA-DOB [-22951bp] C - 12 A vs. T 0.042 (T) 0.058 (T) >1 (-) 0 (-) <0.05
rs57912571 chr6:32750921 HLA-DQB2 [+19610bp] C - 11 A vs. G 0.05 (G) 0.05 (G) >1 (-) 0 (-) <0.05
rs1812006 chr6:32778656 HLA-DOB [-1884bp] C - 12 A vs. G 0.183 (A) - >1 (-) 22 (-) <0.05
rs2067578 chr6:32762461 HLA-DOB [-18079bp] C - 12 A vs. G 0.042 (A) - <1 (-) 0 (-) <0.05
rs115196245 chr6:32778077 HLA-DOB [-2463bp] C - 12 C vs. G 0.05 (C) - <1 (-) 0 (-) <0.05
rs17840161 chr6:32698603 HLA-DQA2 [-10516bp] C - 4 C vs. G 0.008 (G) 0.042 (G) >1 (-) 87 (-) <0.05
rs73408475 chr6:32766496 HLA-DOB [-14044bp] C - 12 T vs. G 0.05 (G) 0.05 (G) >1 (-) 0 (-) <0.05
rs4947344 chr6:32677846 HLA-DQA2 [-31273bp] C - 12 T vs. C 0.308 (T) 0.333 (T) >1 (-) 19 (-) <0.05
rs7767167 chr6:32765182 HLA-DOB [-15358bp] C - 12 A vs. G 0.167 (G) 0.0 (G) <1 (-) 24 (-) <0.05
rs112339869 chr6:32700802 HLA-DQA2 [-8317bp] C - 6 C vs. G - 0.033 (C) <1 (-) 82 (-) <0.05
rs9275577 chr6:32679345 HLA-DQA2 [-29774bp] C - 12 A vs. T 0.425 (A) 0.408 (A) >1 (-) 71 (-) <0.05
rs9276702 chr6:32756741 HLA-DOB [-23799bp] C - 12 A vs. G 0.225 (A) - >1 (-) 20 (-) <0.05
rs9276189 chr6:32699325 HLA-DQA2 [-9794bp] C - 9 A vs. G 0.158 (A) 0.0 (A) >1 (-) 57 (-) <0.05
rs6457681 chr6:32773497 HLA-DOB [-7043bp] C - 12 T vs. G - - <1 (-) 0 (-) <0.05
rs9276710 chr6:32757102 HLA-DOB [-23438bp] C - 12 T vs. C 0.175 (C) 0.075 (C) >1 (-) 24 (-) <0.05
rs9275573 chr6:32679146 HLA-DQA2 [-29973bp] C - 12 C vs. G 0.433 (C) 0.383 (C) >1 (-) 22 (-) <0.05
rs4476871 chr6:32678867 HLA-DQA2 [-30252bp] C - 12 A vs. G 0.433 (G) 0.358 (G) <1 (-) 22 (-) <0.05
rs3998157 chr6:32678477 HLA-DQA2 [-30642bp] C - 12 A vs. C 0.425 (C) 0.375 (C) <1 (-) 22 (-) <0.05
rs9275572 chr6:32678999 HLA-DQA2 [-30120bp] C - 12 A vs. G 0.425 (A) 0.375 (A) >1 (-) 22 (-) <0.05
rs35122968 chr6:32682199 HLA-DQA2 [-26920bp] C - 11 T vs. C 0.092 (C) 0.083 (C) >1 (-) 0 (-) <0.05
rs9275567 chr6:32678131 HLA-DQA2 [-30988bp] C - 12 A vs. G 0.442 (A) 0.392 (A) >1 (-) 22 (-) <0.05
rs9275570 chr6:32678199 HLA-DQA2 [-30920bp] C - 12 A vs. G 0.425 (G) 0.392 (G) <1 (-) 22 (-) <0.05
rs6932517 chr6:32678182 HLA-DQA2 [-30937bp] C - 12 C vs. G 0.425 (C) 0.375 (C) >1 (-) 22 (-) <0.05
rs9275538 chr6:32676017 HLA-DQA2 [-33102bp] C - 12 T vs. C 0.45 (T) 0.4 (T) >1 (-) 24 (-) <0.05
rs9275579 chr6:32679459 HLA-DQA2 [-29660bp] C - 12 A vs. T 0.308 (A) 0.242 (A) <1 (-) 69 (-) <0.05
rs3104407 chr6:32682452 HLA-DQA2 [-26667bp] C - 10 A vs. G 0.458 (A) 0.367 (G) <1 (-) 0 (-) <0.05
rs4273729 chr6:32678597 HLA-DQA2 [-30522bp] C - 12 C vs. G 0.433 (C) 0.375 (C) >1 (-) 23 (-) <0.05
rs9275518 chr6:32674700 HLA-DQA2 [-34419bp] C - 12 A vs. G 0.425 (G) - <1 (-) 23 (-) <0.05
rs9275556 chr6:32677190 HLA-DQA2 [-31929bp] C - 12 T vs. C 0.425 (C) 0.375 (C) <1 (-) 22 (-) <0.05
rs9275557 chr6:32677199 HLA-DQA2 [-31920bp] C - 12 T vs. C 0.425 (C) 0.367 (C) <1 (-) 22 (-) <0.05
rs9275524 chr6:32675109 HLA-DQA2 [-34010bp] C - 12 T vs. C 0.425 (T) 0.375 (T) >1 (-) 23 (-) <0.05
rs9275535 chr6:32675789 HLA-DQA2 [-33330bp] C - 12 A vs. G 0.433 (G) 0.425 (G) <1 (-) 23 (-) <0.05
rs9380318 chr6:32677669 HLA-DQA2 [-31450bp] C - 12 T vs. C 0.417 (C) 0.367 (C) <1 (-) 23 (-) <0.05
rs9275522 chr6:32674970 HLA-DQA2 [-34149bp] C - 12 T vs. C 0.308 (T) 0.242 (T) <1 (-) 69 (-) <0.05
rs9275540 chr6:32676139 HLA-DQA2 [-32980bp] C - 12 A vs. T 0.425 (T) 0.425 (T) <1 (-) 23 (-) <0.05
rs9275555 chr6:32677088 HLA-DQA2 [-32031bp] C - 12 T vs. C 0.308 (T) 0.242 (T) <1 (-) 69 (-) <0.05

Association studies for this region [+]