HLA-DQB2, chr6:32723875-32731311 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275503 chr6:32673931 HLA-DQA2 [-35188bp] All: C 99,286 13 G vs. A 0.175 (G) - 0.78 (0.73-0.84) 0 (0-56) 1.84e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275536 chr6:32675829 HLA-DQA2 [-33290bp] C - 12 A vs. G 0.425 (A) 0.425 (A) >1 (-) 24 (-) <0.05
rs9275578 chr6:32679384 HLA-DQA2 [-29735bp] C - 12 T vs. G 0.308 (T) 0.175 (T) <1 (-) 70 (-) <0.05
rs9275548 chr6:32676530 HLA-DQA2 [-32589bp] C - 12 T vs. C - - <1 (-) 70 (-) <0.05
rs9275547 chr6:32676525 HLA-DQA2 [-32594bp] C - 12 T vs. G - - >1 (-) 70 (-) <0.05
rs3134968 chr6:32674059 HLA-DQA2 [-35060bp] C - 10 A vs. G 0.275 (A) 0.092 (A) >1 (-) 16 (-) <0.05
rs9275517 chr6:32674649 HLA-DQA2 [-34470bp] C - 12 A vs. G 0.425 (A) 0.45 (A) >1 (-) 24 (-) <0.05
rs9275516 chr6:32674643 HLA-DQA2 [-34476bp] C - 12 A vs. G 0.425 (A) 0.45 (A) >1 (-) 24 (-) <0.05
rs4516986 chr6:32678323 HLA-DQA2 [-30796bp] C - 12 C vs. G 0.308 (C) 0.2 (C) <1 (-) 70 (-) <0.05
rs9275527 chr6:32675378 HLA-DQA2 [-33741bp] C - 12 C vs. G 0.308 (G) 0.2 (G) >1 (-) 69 (-) <0.05
rs9275515 chr6:32674573 HLA-DQA2 [-34546bp] C - 12 T vs. C 0.467 (T) 0.417 (T) >1 (-) 24 (-) <0.05
rs9275545 chr6:32676355 HLA-DQA2 [-32764bp] C - 12 T vs. C 0.308 (T) 0.233 (T) <1 (-) 69 (-) <0.05
rs3104404 chr6:32682174 HLA-DQA2 [-26945bp] C - 11 A vs. C 0.117 (A) 0.275 (A) >1 (-) 17 (-) <0.05
rs4513843 chr6:32776590 HLA-DOB [-3950bp] C - 12 C vs. G 0.175 (C) 0.117 (C) <1 (-) 25 (-) <0.05
rs9275502 chr6:32673921 HLA-DQA2 [-35198bp] C - 11 A vs. G 0.308 (G) 0.317 (G) >1 (-) 68 (-) <0.05
rs9275501 chr6:32673920 HLA-DQA2 [-35199bp] C - 11 T vs. C 0.308 (T) 0.35 (T) <1 (-) 68 (-) <0.05
rs9275558 chr6:32677427 HLA-DQA2 [-31692bp] C - 12 T vs. G 0.308 (T) 0.25 (T) <1 (-) 69 (-) <0.05
rs17219281 chr6:32675645 HLA-DQA2 [-33474bp] C - 10 A vs. G 0.075 (A) - <1 (-) 0 (-) <0.05
rs9275565 chr6:32677938 HLA-DQA2 [-31181bp] C - 12 T vs. C 0.417 (T) 0.375 (T) >1 (-) 22 (-) <0.05
rs9275564 chr6:32677927 HLA-DQA2 [-31192bp] C - 12 A vs. C 0.308 (A) 0.242 (A) <1 (-) 70 (-) <0.05
rs9275506 chr6:32674083 HLA-DQA2 [-35036bp] C - 12 A vs. G 0.308 (A) 0.15 (A) <1 (-) 69 (-) <0.05
rs4947350 chr6:32767620 HLA-DOB [-12920bp] C - 12 T vs. C 0.175 (C) 0.117 (C) >1 (-) 28 (-) <0.05
rs3104402 chr6:32681676 HLA-DQA2 [-27443bp] C - 7 T vs. G 0.125 (T) - >1 (-) 29 (-) <0.05
rs719656 chr6:32752561 HLA-DQB2 [+21250bp] C - 12 A vs. C 0.033 (A) 0.142 (A) >1 (-) 0 (-) <0.05
rs2858331 chr6:32681277 HLA-DQA2 [-27842bp] C - 12 A vs. G 0.317 (G) 0.4 (G) <1 (-) 28 (-) <0.05
rs17850863 chr6:32726838 HLA-DQB2 C - 3 T vs. C 0.308 (C) 0.125 (C) <1 (-) 41 (-) <0.05
rs9275514 chr6:32674566 HLA-DQA2 [-34553bp] C - 12 A vs. T 0.458 (T) 0.458 (T) <1 (-) 21 (-) <0.05
rs2894381 chr6:32682228 HLA-DQA2 [-26891bp] C - 11 A vs. G 0.2 (A) 0.342 (A) >1 (-) 13 (-) <0.05
rs9275513 chr6:32674564 HLA-DQA2 [-34555bp] C - 12 A vs. T 0.467 (A) 0.442 (A) >1 (-) 22 (-) >0.05
rs3129731 chr6:32682207 HLA-DQA2 [-26912bp] C - 10 T vs. G 0.417 (T) 0.15 (T) >1 (-) 0 (-) >0.05
rs9275511 chr6:32674329 HLA-DQA2 [-34790bp] C - 12 A vs. G 0.492 (A) 0.442 (G) <1 (-) 23 (-) >0.05
rs6912056 chr6:32774274 HLA-DOB [-6266bp] C - 12 A vs. G 0.175 (A) 0.117 (A) <1 (-) 37 (-) >0.05
rs9275521 chr6:32674952 HLA-DQA2 [-34167bp] C - 12 T vs. C 0.408 (T) 0.233 (T) >1 (-) 27 (-) >0.05
rs67373575 chr6:32682043 HLA-DQA2 [-27076bp] C - 11 A vs. T 0.133 (T) 0.117 (T) <1 (-) 69 (-) >0.05
rs3134966 chr6:32674298 HLA-DQA2 [-34821bp] C - 12 T vs. C 0.283 (T) 0.125 (T) >1 (-) 31 (-) >0.05
rs3129726 chr6:32678206 HLA-DQA2 [-30913bp] C - 12 A vs. G 0.283 (G) 0.125 (G) <1 (-) 28 (-) >0.05
rs117773289 chr6:32675292 HLA-DQA2 [-33827bp] C - 10 A vs. G - 0.017 (G) <1 (-) 0 (-) >0.05
rs17206378 chr6:32675161 HLA-DQA2 [-33958bp] C - 11 T vs. G 0.133 (T) 0.125 (T) >1 (-) 71 (-) >0.05
rs35332745 chr6:32674225 HLA-DQA2 [-34894bp] C - 11 T vs. C - - <1 (-) 71 (-) >0.05
rs35472821 chr6:32674529 HLA-DQA2 [-34590bp] C - 11 C vs. G - - >1 (-) 71 (-) >0.05
rs9275508 chr6:32674159 HLA-DQA2 [-34960bp] C - 12 C vs. G - - >1 (-) 64 (-) >0.05
rs9275504 chr6:32673986 HLA-DQA2 [-35133bp] C - 11 T vs. C 0.317 (T) 0.183 (T) <1 (-) 67 (-) >0.05
rs116731949 chr6:32742762 HLA-DQB2 [+11451bp] C - 7 T vs. C - - <1 (-) 0 (-) >0.05
rs10947332 chr6:32677440 HLA-DQA2 [-31679bp] C - 11 A vs. G 0.133 (A) 0.1 (A) >1 (-) 72 (-) >0.05
rs34709043 chr6:32676486 HLA-DQA2 [-32633bp] C - 11 A vs. C 0.133 (C) 0.108 (C) <1 (-) 71 (-) >0.05
rs9275520 chr6:32674839 HLA-DQA2 [-34280bp] C - 11 C vs. G - - <1 (-) 70 (-) >0.05
rs34388057 chr6:32675951 HLA-DQA2 [-33168bp] C - 11 A vs. T 0.133 (T) 0.1 (T) <1 (-) 71 (-) >0.05
rs12525220 chr6:32675470 HLA-DQA2 [-33649bp] C - 11 A vs. G 0.017 (A) 0.133 (A) >1 (-) 0 (-) >0.05
rs2086399 chr6:32750370 HLA-DQB2 [+19059bp] C - 12 A vs. G 0.042 (G) - <1 (-) 0 (-) >0.05
rs28699566 chr6:32686296 HLA-DQA2 [-22823bp] C - 6 A vs. T 0.008 (T) 0.025 (T) >1 (-) 9 (-) >0.05
rs12527228 chr6:32679992 HLA-DQA2 [-29127bp] C - 10 T vs. C 0.017 (T) 0.042 (T) >1 (-) 0 (-) >0.05

Association studies for this region [+]