HLA-DQB2, chr6:32723875-32731311 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275503 chr6:32673931 HLA-DQA2 [-35188bp] All: C 99,286 13 G vs. A 0.175 (G) - 0.78 (0.73-0.84) 0 (0-56) 1.84e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs5001633 chr6:32723085 HLA-DQB2 [-790bp] C - 12 T vs. C 0.425 (C) 0.242 (T) <1 (-) 27 (-) >0.05
rs9276379 chr6:32707641 HLA-DQA2 [-1478bp] C - 11 A vs. C 0.15 (A) - <1 (-) 0 (-) >0.05
rs9469228 chr6:32687890 HLA-DQA2 [-21229bp] C - 12 A vs. G 0.35 (G) 0.35 (A) <1 (-) 12 (-) >0.05
rs9275919 chr6:32692587 HLA-DQA2 [-16532bp] C - 11 T vs. C 0.358 (T) 0.167 (T) <1 (-) 9 (-) >0.05
rs9276378 chr6:32707638 HLA-DQA2 [-1481bp] C - 11 T vs. C 0.15 (T) - <1 (-) 0 (-) >0.05
rs9276150 chr6:32698212 HLA-DQA2 [-10907bp] C - 11 A vs. C 0.492 (A) 0.225 (C) >1 (-) 8 (-) >0.05
rs9275920 chr6:32692588 HLA-DQA2 [-16531bp] C - 11 A vs. G 0.325 (G) 0.167 (G) >1 (-) 9 (-) >0.05
rs9276358 chr6:32706725 HLA-DQA2 [-2394bp] C - 11 A vs. G 0.192 (G) - <1 (-) 0 (-) >0.05
rs7381625 chr6:32734169 HLA-DQB2 [+2858bp] C - 12 T vs. C 0.425 (T) 0.333 (C) <1 (-) 30 (-) >0.05
rs9275976 chr6:32693847 HLA-DQA2 [-15272bp] C - 10 A vs. G 0.317 (G) 0.167 (G) >1 (-) 15 (-) >0.05
rs9275977 chr6:32693850 HLA-DQA2 [-15269bp] C - 10 A vs. T 0.3 (A) 0.167 (A) <1 (-) 15 (-) >0.05
rs28744289 chr6:32774920 HLA-DOB [-5620bp] C - 12 T vs. G 0.092 (T) 0.058 (T) >1 (-) 0 (-) >0.05
rs2857137 chr6:32775602 HLA-DOB [-4938bp] C - 12 A vs. G 0.392 (A) 0.25 (A) <1 (-) 14 (-) >0.05
rs11965958 chr6:32770663 HLA-DOB [-9877bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs9501201 chr6:32746264 HLA-DQB2 [+14953bp] C - 12 T vs. G - - >1 (-) 0 (-) >0.05
rs73732612 chr6:32695202 HLA-DQA2 [-13917bp] C - 3 T vs. C - - >1 (-) 0 (-) >0.05
rs2621413 chr6:32742531 HLA-DQB2 [+11220bp] C - 12 T vs. G 0.35 (G) 0.292 (G) >1 (-) 10 (-) >0.05
rs9276325 chr6:32705210 HLA-DQA2 [-3909bp] C - 11 T vs. G 0.2 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs62403978 chr6:32683705 HLA-DQA2 [-25414bp] C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs7747423 chr6:32698570 HLA-DQA2 [-10549bp] C - 11 A vs. G 0.5 (A) 0.233 (G) >1 (-) 8 (-) >0.05
rs2859081 chr6:32702108 HLA-DQA2 [-7011bp] C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs6903130 chr6:32732210 HLA-DQB2 [+899bp] C - 12 A vs. G 0.425 (A) 0.333 (G) <1 (-) 31 (-) >0.05
rs73732611 chr6:32695075 HLA-DQA2 [-14044bp] C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs12177980 chr6:32686084 HLA-DQA2 [-23035bp] C - 12 A vs. G 0.35 (A) 0.325 (G) >1 (-) 15 (-) >0.05
rs9275946 chr6:32693090 HLA-DQA2 [-16029bp] C - 11 T vs. C 0.333 (C) 0.158 (C) >1 (-) 4 (-) >0.05
rs9276396 chr6:32708736 HLA-DQA2 [-383bp] C - 11 T vs. C 0.292 (T) 0.117 (T) <1 (-) 19 (-) >0.05
rs9276249 chr6:32701372 HLA-DQA2 [-7747bp] C - 11 A vs. C - - >1 (-) 0 (-) >0.05
rs28772314 chr6:32686688 HLA-DQA2 [-22431bp] C - 12 A vs. G 0.35 (A) - >1 (-) 16 (-) >0.05
rs2647083 chr6:32679722 HLA-DQA2 [-29397bp] C - 12 C vs. G 0.258 (G) 0.367 (G) >1 (-) 33 (-) >0.05
rs9276644 chr6:32745043 HLA-DQB2 [+13732bp] C - 12 T vs. C 0.267 (C) 0.258 (C) >1 (-) 0 (-) >0.05
rs9276646 chr6:32745200 HLA-DQB2 [+13889bp] C - 12 A vs. T 0.267 (T) 0.25 (T) >1 (-) 0 (-) >0.05
rs7760168 chr6:32746051 HLA-DQB2 [+14740bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs5019294 chr6:32733580 HLA-DQB2 [+2269bp] C - 12 A vs. G 0.417 (G) - >1 (-) 31 (-) >0.05
rs17500510 chr6:32712818 HLA-DQA2 C - 8 A vs. G 0.083 (A) 0.033 (A) <1 (-) 24 (-) >0.05
rs2857113 chr6:32780201 HLA-DOB [-339bp] C - 11 T vs. C 0.392 (C) 0.25 (C) <1 (-) 9 (-) >0.05
rs28772323 chr6:32687066 HLA-DQA2 [-22053bp] C - 12 A vs. C 0.35 (C) 0.342 (A) <1 (-) 16 (-) >0.05
rs9276558 chr6:32724061 HLA-DQB2 C - 12 A vs. G 0.492 (A) 0.233 (A) >1 (-) 30 (-) >0.05
rs3213490 chr6:32724258 HLA-DQB2 C - 12 T vs. C 0.417 (T) 0.233 (C) >1 (-) 28 (-) >0.05
rs9275909 chr6:32692339 HLA-DQA2 [-16780bp] C - 11 T vs. C - - <1 (-) 10 (-) >0.05
rs3213486 chr6:32724324 HLA-DQB2 C - 12 T vs. C 0.5 (C) 0.233 (T) >1 (-) 26 (-) >0.05
rs3213487 chr6:32724317 HLA-DQB2 C - 12 T vs. C 0.492 (C) 0.233 (C) <1 (-) 26 (-) >0.05
rs9276728 chr6:32764042 HLA-DOB [-16498bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs2859079 chr6:32702381 HLA-DQA2 [-6738bp] C - 11 T vs. G 0.192 (G) 0.075 (G) <1 (-) 0 (-) >0.05
rs9276052 chr6:32695783 HLA-DQA2 [-13336bp] C - 10 A vs. G 0.308 (A) 0.142 (A) <1 (-) 30 (-) >0.05
rs3101941 chr6:32775563 HLA-DOB [-4977bp] C - 12 A vs. G 0.392 (A) 0.25 (A) <1 (-) 11 (-) >0.05
rs9276053 chr6:32695790 HLA-DQA2 [-13329bp] C - 10 T vs. C 0.308 (T) 0.125 (T) <1 (-) 30 (-) >0.05
rs9276313 chr6:32704706 HLA-DQA2 [-4413bp] C - 11 A vs. G 0.2 (A) - >1 (-) 0 (-) >0.05
rs2857161 chr6:32759297 HLA-DOB [-21243bp] C - 12 A vs. G 0.433 (G) 0.25 (G) <1 (-) 12 (-) >0.05
rs9469232 chr6:32688313 HLA-DQA2 [-20806bp] C - 12 A vs. G 0.342 (A) 0.317 (G) >1 (-) 15 (-) >0.05
rs73732643 chr6:32696516 HLA-DQA2 [-12603bp] C - 3 A vs. C - - >1 (-) 0 (-) >0.05

Association studies for this region [+]