HLA-DQB2, chr6:32723875-32731311 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275503 chr6:32673931 HLA-DQA2 [-35188bp] All: C 99,286 13 G vs. A 0.175 (G) - 0.78 (0.73-0.84) 0 (0-56) 1.84e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275602 chr6:32682812 HLA-DQA2 [-26307bp] C - 9 A vs. C 0.15 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs1015576 chr6:32737864 HLA-DQB2 [+6553bp] C - 12 A vs. G 0.35 (G) 0.367 (A) <1 (-) 25 (-) >0.05
rs9276643 chr6:32744834 HLA-DQB2 [+13523bp] C - 12 C vs. G 0.358 (G) 0.242 (G) >1 (-) 19 (-) >0.05
rs9276532 chr6:32721130 HLA-DQB2 [-2745bp] C - 12 T vs. C 0.492 (T) 0.233 (T) >1 (-) 24 (-) >0.05
rs763024 chr6:32691944 HLA-DQA2 [-17175bp] C - 11 A vs. G 0.5 (G) 0.25 (G) >1 (-) 10 (-) >0.05
rs2008560 chr6:32729734 HLA-DQB2 C - 12 C vs. G 0.433 (G) 0.133 (C) >1 (-) 14 (-) >0.05
rs28724888 chr6:32738381 HLA-DQB2 [+7070bp] C - 12 A vs. G 0.35 (A) 0.35 (G) >1 (-) 29 (-) >0.05
rs2857190 chr6:32748045 HLA-DQB2 [+16734bp] C - 12 T vs. C 0.342 (T) 0.233 (T) <1 (-) 0 (-) >0.05
rs9276524 chr6:32720531 MIR3135B [+2775bp] C - 12 A vs. G 0.492 (G) 0.233 (G) <1 (-) 25 (-) >0.05
rs9276429 chr6:32712104 HLA-DQA2 C - 11 A vs. G 0.492 (G) 0.175 (G) >1 (-) 29 (-) >0.05
rs9276525 chr6:32720539 MIR3135B [+2783bp] C - 12 A vs. C 0.492 (A) 0.233 (A) >1 (-) 25 (-) >0.05
rs2239799 chr6:32713487 HLA-DQA2 C - 10 A vs. G - - <1 (-) 14 (-) >0.05
rs9296042 chr6:32736005 HLA-DQB2 [+4694bp] C - 12 T vs. C 0.342 (T) 0.35 (C) >1 (-) 10 (-) >0.05
rs9276607 chr6:32737257 HLA-DQB2 [+5946bp] C - 12 T vs. G 0.2 (T) - >1 (-) 0 (-) >0.05
rs9276698 chr6:32756386 HLA-DOB [-24154bp] C - 12 A vs. G 0.433 (G) 0.242 (G) <1 (-) 5 (-) >0.05
rs114446488 chr6:32683876 HLA-DQA2 [-25243bp] C - 9 A vs. G 0.033 (A) - >1 (-) 31 (-) >0.05
rs2227128 chr6:32711400 HLA-DQA2 C - 11 T vs. C 0.492 (T) 0.175 (T) <1 (-) 28 (-) >0.05
rs9276694 chr6:32756030 HLA-DOB [-24510bp] C - 12 T vs. C - - >1 (-) 5 (-) >0.05
rs9276365 chr6:32707040 HLA-DQA2 [-2079bp] C - 11 A vs. G 0.208 (A) 0.025 (A) >1 (-) 0 (-) >0.05
rs7768538 chr6:32729821 HLA-DQB2 C - 12 A vs. C 0.492 (C) 0.142 (C) <1 (-) 26 (-) >0.05
rs6918401 chr6:32722625 HLA-DQB2 [-1250bp] C - 12 T vs. C 0.5 (T) 0.242 (T) >1 (-) 25 (-) >0.05
rs2395252 chr6:32711322 HLA-DQA2 C - 11 C vs. G 0.5 (G) 0.158 (C) <1 (-) 28 (-) >0.05
rs117784767 chr6:32733404 HLA-DQB2 [+2093bp] C - 11 A vs. T - 0.092 (T) <1 (-) 0 (-) >0.05
rs9275924 chr6:32692735 HLA-DQA2 [-16384bp] C - 10 A vs. C 0.3 (A) 0.167 (A) <1 (-) 27 (-) >0.05
rs2070120 chr6:32780914 HLA-DOB C - 12 A vs. G 0.05 (A) 0.05 (A) <1 (-) 0 (-) >0.05
rs2213569 chr6:32721574 HLA-DQB2 [-2301bp] C - 12 T vs. C 0.492 (C) 0.233 (C) <1 (-) 25 (-) >0.05
rs9276428 chr6:32712085 HLA-DQA2 C - 11 T vs. G 0.492 (G) 0.175 (G) >1 (-) 28 (-) >0.05
rs5027459 chr6:32719028 MIR3135B [+1272bp] C - 11 A vs. G 0.292 (G) 0.125 (G) <1 (-) 26 (-) >0.05
rs9276444 chr6:32715371 HLA-DQA2 [+379bp] C - 11 C vs. G - - <1 (-) 29 (-) >0.05
rs2621400 chr6:32750318 HLA-DQB2 [+19007bp] C - 12 C vs. G 0.417 (G) 0.233 (G) <1 (-) 6 (-) >0.05
rs141357388 chr6:32762799 HLA-DOB [-17741bp] C - 3 A vs. C - - >1 (-) 0 (-) >0.05
rs13203691 chr6:32752647 HLA-DQB2 [+21336bp] C - 12 A vs. G 0.092 (G) - <1 (-) 0 (-) >0.05
rs13219964 chr6:32752649 HLA-DQB2 [+21338bp] C - 12 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs9276534 chr6:32721195 HLA-DQB2 [-2680bp] C - 12 T vs. C 0.492 (C) 0.233 (C) <1 (-) 25 (-) >0.05
rs9276427 chr6:32711857 HLA-DQA2 C - 11 T vs. C 0.425 (C) 0.2 (T) <1 (-) 34 (-) >0.05
rs28892574 chr6:32756320 HLA-DOB [-24220bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs9276482 chr6:32718162 MIR3135B [+406bp] C - 11 T vs. C 0.492 (C) 0.125 (C) >1 (-) 29 (-) >0.05
rs28772287 chr6:32674400 HLA-DQA2 [-34719bp] C - 12 T vs. C 0.183 (C) 0.325 (C) <1 (-) 8 (-) >0.05
rs2621395 chr6:32754367 HLA-DQB2 [+23056bp] C - 12 T vs. G - - <1 (-) 4 (-) >0.05
rs6457654 chr6:32735416 HLA-DQB2 [+4105bp] C - 12 A vs. G 0.35 (G) 0.242 (A) >1 (-) 21 (-) >0.05
rs2621399 chr6:32750951 HLA-DQB2 [+19640bp] C - 12 T vs. C 0.408 (C) 0.233 (C) <1 (-) 6 (-) >0.05
rs5021452 chr6:32708074 HLA-DQA2 [-1045bp] C - 11 T vs. C 0.192 (T) 0.05 (T) >1 (-) 0 (-) >0.05
rs73404808 chr6:32731932 HLA-DQB2 [+621bp] C - 11 C vs. G - 0.133 (G) >1 (-) 0 (-) >0.05
rs9276440 chr6:32714783 HLA-DQA2 C - 11 A vs. T 0.492 (A) 0.233 (A) >1 (-) 31 (-) >0.05
rs16870693 chr6:32711691 HLA-DQA2 C - 6 A vs. C 0.008 (A) 0.133 (A) <1 (-) 11 (-) >0.05
rs9276672 chr6:32749606 HLA-DQB2 [+18295bp] C - 12 A vs. C 0.342 (C) 0.233 (C) >1 (-) 11 (-) >0.05
rs2857188 chr6:32749805 HLA-DQB2 [+18494bp] C - 12 A vs. G 0.15 (A) - <1 (-) 0 (-) >0.05
rs73733586 chr6:32722977 HLA-DQB2 [-898bp] C - 3 A vs. G - - <1 (-) 0 (-) >0.05
rs2857177 chr6:32752840 HLA-DQB2 [+21529bp] C - 12 T vs. C 0.433 (T) 0.233 (T) >1 (-) 7 (-) >0.05
rs1015575 chr6:32738115 HLA-DQB2 [+6804bp] C - 12 A vs. G 0.35 (A) 0.333 (G) >1 (-) 28 (-) >0.05

Association studies for this region [+]