HLA-DQB2, chr6:32723875-32731311 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275503 chr6:32673931 HLA-DQA2 [-35188bp] All: C 99,286 13 G vs. A 0.175 (G) - 0.78 (0.73-0.84) 0 (0-56) 1.84e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2213567 chr6:32711655 HLA-DQA2 C - 11 C vs. G 0.5 (C) 0.308 (G) <1 (-) 28 (-) >0.05
rs7754020 chr6:32722019 HLA-DQB2 [-1856bp] C - 12 A vs. T 0.492 (T) 0.233 (T) <1 (-) 24 (-) >0.05
rs2857189 chr6:32748943 HLA-DQB2 [+17632bp] C - 12 T vs. G 0.4 (G) 0.233 (G) <1 (-) 14 (-) >0.05
rs62396665 chr6:32737638 HLA-DQB2 [+6327bp] C - 11 T vs. C - - <1 (-) 0 (-) >0.05
rs3997849 chr6:32682402 HLA-DQA2 [-26717bp] C - 11 T vs. C 0.25 (T) 0.175 (T) >1 (-) 18 (-) >0.05
rs10807113 chr6:32722186 HLA-DQB2 [-1689bp] C - 11 A vs. C 0.425 (A) 0.233 (C) >1 (-) 30 (-) >0.05
rs17212699 chr6:32675130 HLA-DQA2 [-33989bp] C - 12 A vs. G 0.167 (G) 0.292 (G) <1 (-) 7 (-) >0.05
rs9275762 chr6:32689277 HLA-DQA2 [-19842bp] C - 12 T vs. C 0.458 (C) - >1 (-) 5 (-) >0.05
rs3997848 chr6:32682394 HLA-DQA2 [-26725bp] C - 11 T vs. G 0.242 (G) 0.183 (G) <1 (-) 18 (-) >0.05
rs9276454 chr6:32715846 HLA-DQA2 [+854bp] C - 11 A vs. G 0.492 (A) 0.2 (A) >1 (-) 30 (-) >0.05
rs117177698 chr6:32731377 HLA-DQB2 [+66bp] C - 11 A vs. G - 0.1 (A) >1 (-) 0 (-) >0.05
rs55877228 chr6:32706321 HLA-DQA2 [-2798bp] C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs117557023 chr6:32731608 HLA-DQB2 [+297bp] C - 11 T vs. G - 0.1 (T) >1 (-) 0 (-) >0.05
rs150190123 chr6:32749758 HLA-DQB2 [+18447bp] C - 11 A vs. G - - <1 (-) 21 (-) >0.05
rs17213693 chr6:32781121 HLA-DOB C - 12 C vs. G 0.05 (C) 0.033 (C) >1 (-) 0 (-) >0.05
rs28772281 chr6:32674086 HLA-DQA2 [-35033bp] C - 12 A vs. G 0.183 (A) 0.292 (A) >1 (-) 8 (-) >0.05
rs200126619 chr6:32731165 HLA-DQB2 C - 3 C vs. G - - >1 (-) 0 (-) >0.05
rs17212643 chr6:32674865 HLA-DQA2 [-34254bp] C - 12 A vs. T 0.183 (T) 0.283 (T) <1 (-) 8 (-) >0.05
rs117807149 chr6:32732156 HLA-DQB2 [+845bp] C - 11 A vs. T - 0.05 (A) >1 (-) 0 (-) >0.05
rs9276413 chr6:32710556 HLA-DQA2 C - 11 T vs. C 0.483 (T) 0.175 (C) >1 (-) 23 (-) >0.05
rs9276799 chr6:32778686 HLA-DOB [-1854bp] C - 12 C vs. G - - >1 (-) 17 (-) >0.05
rs2621348 chr6:32772575 HLA-DOB [-7965bp] C - 12 T vs. G 0.383 (T) - <1 (-) 18 (-) >0.05
rs7748018 chr6:32717333 MIR3135B [-356bp] C - 11 T vs. C 0.5 (T) 0.233 (C) <1 (-) 30 (-) >0.05
rs2621407 chr6:32747569 HLA-DQB2 [+16258bp] C - 12 T vs. C 0.433 (C) 0.25 (C) >1 (-) 15 (-) >0.05
rs2857192 chr6:32747550 HLA-DQB2 [+16239bp] C - 12 A vs. T 0.433 (T) 0.25 (T) >1 (-) 15 (-) >0.05
rs2857183 chr6:32750982 HLA-DQB2 [+19671bp] C - 12 A vs. G 0.342 (A) 0.233 (A) <1 (-) 0 (-) >0.05
rs9276798 chr6:32778672 HLA-DOB [-1868bp] C - 12 T vs. C - - >1 (-) 17 (-) >0.05
rs58538826 chr6:32704815 HLA-DQA2 [-4304bp] C - 3 A vs. G - - <1 (-) 0 (-) >0.05
rs17220087 chr6:32781076 HLA-DOB C - 12 A vs. C 0.058 (A) 0.108 (A) <1 (-) 0 (-) >0.05
rs6918587 chr6:32722611 HLA-DQB2 [-1264bp] C - 12 A vs. G 0.492 (A) 0.242 (A) >1 (-) 27 (-) >0.05
rs6918592 chr6:32722614 HLA-DQB2 [-1261bp] C - 12 A vs. G 0.492 (G) 0.242 (A) >1 (-) 27 (-) >0.05
rs9276425 chr6:32711050 HLA-DQA2 C - 8 T vs. C 0.192 (T) - <1 (-) 0 (-) >0.05
rs9276653 chr6:32746414 HLA-DQB2 [+15103bp] C - 12 A vs. G - - <1 (-) 12 (-) >0.05
rs117996505 chr6:32737594 HLA-DQB2 [+6283bp] C - 11 T vs. C - 0.092 (T) >1 (-) 0 (-) >0.05
rs28892573 chr6:32750915 HLA-DQB2 [+19604bp] C - 12 A vs. G 0.033 (G) - <1 (-) 0 (-) >0.05
rs9276466 chr6:32716452 MIR3135B [-1237bp] C - 11 T vs. G 0.492 (T) 0.233 (T) >1 (-) 30 (-) >0.05
rs2621408 chr6:32747542 HLA-DQB2 [+16231bp] C - 12 C vs. G 0.408 (C) 0.25 (C) <1 (-) 18 (-) >0.05
rs6457657 chr6:32737104 HLA-DQB2 [+5793bp] C - 12 A vs. T 0.35 (A) 0.242 (T) >1 (-) 23 (-) >0.05
rs2858883 chr6:32700761 HLA-DQA2 [-8358bp] C - 11 T vs. C 0.342 (C) 0.108 (C) >1 (-) 0 (-) >0.05
rs9276441 chr6:32714894 HLA-DQA2 C - 11 C vs. G 0.492 (G) 0.233 (G) <1 (-) 30 (-) >0.05
rs28573770 chr6:32679275 HLA-DQA2 [-29844bp] C - 6 A vs. T - - <1 (-) 14 (-) >0.05
rs2857193 chr6:32747528 HLA-DQB2 [+16217bp] C - 12 A vs. G 0.433 (G) 0.25 (G) <1 (-) 9 (-) >0.05
rs2227136 chr6:32716810 MIR3135B [-879bp] C - 11 A vs. G 0.492 (A) 0.233 (A) >1 (-) 31 (-) >0.05
rs2227135 chr6:32716813 MIR3135B [-876bp] C - 11 A vs. G 0.492 (A) 0.233 (A) >1 (-) 31 (-) >0.05
rs2621405 chr6:32748039 HLA-DQB2 [+16728bp] C - 12 T vs. C 0.417 (C) 0.242 (C) <1 (-) 8 (-) >0.05
rs9276490 chr6:32718681 MIR3135B [+925bp] C - 11 A vs. G 0.492 (A) 0.233 (A) >1 (-) 29 (-) >0.05
rs9276417 chr6:32710712 HLA-DQA2 C - 8 C vs. G - - >1 (-) 0 (-) >0.05
rs1825003 chr6:32736254 HLA-DQB2 [+4943bp] C - 12 A vs. G 0.35 (G) 0.242 (A) <1 (-) 22 (-) >0.05
rs9276580 chr6:32727209 HLA-DQB2 C - 10 T vs. G - - >1 (-) 15 (-) >0.05
rs9276514 chr6:32720151 MIR3135B [+2395bp] C - 12 T vs. C 0.5 (C) 0.233 (T) <1 (-) 28 (-) >0.05

Association studies for this region [+]