HLA-DRB1, chr6:32546546-32557625 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs504594 - HLA-DRB1 All: C 104,595 13 C vs. A - - 1.24 (1.17-1.32) 36 (0-67) 5.73e-13
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9271676 chr6:32592868 HLA-DQA1 [-3088bp] All: C 44,247 3 C vs. T 0.383 (C) 0.358 (C) 0.87 (0.81-0.94) 0 (0-89) 3.90e-04
rs3104414 chr6:32582612 HLA-DQA1 [-13344bp] All: C 11,858 4 A vs. G 0.433 (A) 0.233 (A) 0.82 (0.73-0.91) 0 (0-68) 3.91e-04
rs9271348 chr6:32583742 HLA-DQA1 [-12214bp] All: C 45,262 5 G vs. A 0.333 (G) 0.183 (G) 1.13 (1.06-1.21) 0 (0-68) 3.97e-04
rs686250 chr6:32585055 HLA-DQA1 [-10901bp] All: C 45,262 5 A vs. G 0.325 (A) 0.442 (A) 1.14 (1.06-1.23) 44 (0-80) 4.10e-04
rs9271194 chr6:32578612 HLA-DQA1 [-17344bp] All: C 84,927 7 T vs. G 0.367 (T) 0.183 (T) 1.10 (1.04-1.16) 0 (0-65) 4.11e-04
rs9271193 chr6:32578566 HLA-DQA1 [-17390bp] All: C 84,927 7 T vs. C 0.358 (T) 0.183 (T) 1.10 (1.04-1.16) 0 (0-65) 4.19e-04
rs9271192 chr6:32578530 HLA-DQA1 [-17426bp] All: C 84,927 7 C vs. A 0.367 (C) 0.158 (C) 1.10 (1.04-1.16) 0 (0-65) 4.27e-04
rs9271189 chr6:32578357 HLA-DQA1 [-17599bp] All: C 84,927 7 C vs. T 0.367 (C) 0.183 (C) 1.10 (1.04-1.16) 0 (0-65) 4.29e-04
rs3129757 chr6:32584609 HLA-DQA1 [-11347bp] All: C 98,840 12 A vs. C 0.2 (A) 0.142 (A) 1.11 (1.05-1.18) 45 (0-72) 4.36e-04
rs28490179 chr6:32519005 RNU1-61P [+1138bp] All: C 39,022 3 C vs. T 0.233 (C) 0.233 (C) 1.17 (1.07-1.27) 65 (0-90) 4.47e-04
rs28507026 chr6:32582485 HLA-DQA1 [-13471bp] C - 4 A vs. G 0.15 (G) 0.133 (G) >1 (-) 0 (-) <0.05
rs13204736 chr6:32582603 HLA-DQA1 [-13353bp] All: C 45,262 5 A vs. G 0.433 (A) 0.417 (A) 0.85 (0.78-0.93) 0 (0-61) 4.60e-04
rs9271525 chr6:32589842 HLA-DQA1 [-6114bp] All: C 81,958 6 G vs. A 0.225 (G) 0.158 (G) 1.13 (1.06-1.21) 70 (29-87) 4.60e-04
rs9271323 chr6:32582454 HLA-DQA1 [-13502bp] C - 4 A vs. G - - >1 (-) 0 (-) <0.05
rs34656207 chr6:32582601 HLA-DQA1 [-13355bp] All: C 45,262 5 T vs. C 0.417 (T) 0.433 (T) 0.86 (0.78-0.93) 0 (0-61) 4.70e-04
rs35186928 chr6:32582604 HLA-DQA1 [-13352bp] All: C 45,262 5 A vs. G 0.433 (A) 0.417 (A) 0.86 (0.78-0.93) 0 (0-61) 4.70e-04
rs3104389 chr6:32595097 HLA-DQA1 [-859bp] All: C 44,247 3 A vs. C 0.392 (A) 0.392 (A) 0.89 (0.84-0.95) 0 (0-75) 4.95e-04
rs9271165 chr6:32577785 HLA-DQA1 [-18171bp] All: C 84,927 7 A vs. G 0.392 (A) 0.183 (A) 1.10 (1.04-1.15) 0 (0-71) 5.23e-04
rs9271643 chr6:32592229 HLA-DQA1 [-3727bp] All: C 44,247 3 A vs. G 0.367 (A) 0.367 (A) 0.88 (0.82-0.95) 10 (0-91) 5.24e-04
rs9271644 chr6:32592337 HLA-DQA1 [-3619bp] All: C 44,247 3 A vs. G 0.358 (A) 0.375 (A) 0.88 (0.82-0.95) 10 (0-91) 5.26e-04
rs9271164 chr6:32577784 HLA-DQA1 [-18172bp] All: C 84,927 7 C vs. T 0.392 (C) 0.183 (C) 1.10 (1.04-1.15) 0 (0-71) 5.28e-04
rs3997872 chr6:32580617 HLA-DQA1 [-15339bp] C - 3 A vs. T 0.267 (A) 0.083 (A) <1 (-) 21 (-) <0.05
rs4959030 chr6:32591751 HLA-DQA1 [-4205bp] All: C 44,247 3 A vs. G 0.217 (A) 0.083 (A) 1.16 (1.07-1.26) 27 (0-92) 5.42e-04
rs3104413 chr6:32582650 HLA-DQA1 [-13306bp] C - 3 C vs. G 0.267 (G) 0.167 (G) >1 (-) 12 (-) <0.05
rs9271628 chr6:32591971 HLA-DQA1 [-3985bp] All: C 44,247 3 G vs. T 0.35 (G) - 0.88 (0.82-0.95) 19 (0-92) 6.07e-04
rs9271514 chr6:32589613 HLA-DQA1 [-6343bp] C - 8 A vs. G 0.408 (A) 0.392 (A) >1 (-) 0 (-) <0.05
rs2395516 chr6:32580657 HLA-DQA1 [-15299bp] All: C 45,262 5 C vs. T 0.375 (C) 0.408 (C) 0.88 (0.82-0.95) 0 (0-77) 6.44e-04
rs3129747 chr6:32581008 HLA-DQA1 [-14948bp] All: C 45,262 5 T vs. C - - 1.14 (1.06-1.22) 0 (0-77) 6.58e-04
rs9271138 chr6:32577025 HLA-DQA1 [-18931bp] All: C 8,889 3 G vs. T - - 0.81 (0.72-0.92) 63 (0-89) 6.58e-04
rs9271772 chr6:32594275 HLA-DQA1 [-1681bp] All: C 77,007 4 G vs. A 0.225 (G) 0.242 (G) 1.12 (1.05-1.19) 60 (0-87) 6.64e-04
rs9271406 chr6:32587588 HLA-DQA1 [-8368bp] C - 3 A vs. G 0.442 (A) 0.492 (A) >1 (-) 0 (-) <0.05
rs2760976 chr6:32560839 HLA-DRB1 [+3214bp] All: C 11,858 4 T vs. C 0.258 (T) 0.108 (T) 0.80 (0.70-0.91) 0 (-) 6.76e-04
rs9271025 chr6:32574990 HLA-DRB1 [+17365bp] All: C 78,022 6 C vs. T - - 0.90 (0.84-0.95) 70 (30-87) 6.76e-04
rs9271607 chr6:32591566 HLA-DQA1 [-4390bp] All: C 44,247 3 G vs. A 0.383 (G) 0.383 (G) 0.89 (0.83-0.95) 18 (0-91) 6.99e-04
rs2002779 chr6:32601684 HLA-DQA1 All: C 40,613 3 T vs. G 0.208 (T) 0.158 (T) 1.24 (1.10-1.41) 78 (27-93) 7.11e-04
rs9271687 chr6:32592985 HLA-DQA1 [-2971bp] All: C 44,247 3 A vs. G 0.225 (A) 0.142 (A) 1.17 (1.07-1.28) 22 (0-92) 7.21e-04
rs9271592 chr6:32591173 HLA-DQA1 [-4783bp] All: C 52,167 6 T vs. C 0.375 (T) 0.375 (T) 0.89 (0.84-0.95) 0 (0-57) 7.27e-04
rs9271515 chr6:32589645 HLA-DQA1 [-6311bp] C - 5 A vs. G 0.417 (A) 0.392 (A) >1 (-) 0 (-) <0.05
rs9271605 chr6:32591448 HLA-DQA1 [-4508bp] All: C 44,247 3 A vs. G 0.375 (A) 0.375 (A) 0.89 (0.83-0.95) 19 (0-92) 7.70e-04
rs9271595 chr6:32591235 HLA-DQA1 [-4721bp] All: C 44,247 3 A vs. G - - 1.13 (1.05-1.21) 17 (0-91) 8.66e-04
rs9271596 chr6:32591237 HLA-DQA1 [-4719bp] All: C 44,247 3 G vs. A 0.392 (G) 0.383 (G) 0.89 (0.83-0.95) 17 (0-91) 8.66e-04
rs28383231 chr6:32584099 HLA-DQA1 [-11857bp] All: C 45,262 5 C vs. T 0.367 (C) 0.467 (T) 1.13 (1.05-1.21) 41 (0-78) 8.90e-04
rs28383230 chr6:32584088 HLA-DQA1 [-11868bp] All: C 45,262 5 T vs. C 0.367 (T) 0.442 (C) 1.13 (1.05-1.21) 42 (0-79) 9.05e-04
rs3104419 chr6:32580136 HLA-DQA1 [-15820bp] C - 5 T vs. C 0.5 (T) 0.433 (T) <1 (-) 0 (-) <0.05
rs2858861 chr6:32580331 HLA-DQA1 [-15625bp] C - 5 T vs. C 0.492 (T) 0.408 (T) <1 (-) 0 (-) <0.05
rs2858860 chr6:32580366 HLA-DQA1 [-15590bp] C - 5 T vs. G 0.467 (T) 0.425 (T) <1 (-) 0 (-) <0.05
rs33915496 chr6:32583979 HLA-DQA1 [-11977bp] All: C 45,262 5 G vs. A 0.375 (G) 0.433 (G) 0.88 (0.82-0.95) 0 (0-62) 0.001
rs28383224 chr6:32583653 HLA-DQA1 [-12303bp] All: C 45,262 5 A vs. G 0.35 (A) 0.458 (G) 1.12 (1.05-1.20) 46 (0-80) 0.001
rs4959105 chr6:32583146 HLA-DQA1 [-12810bp] C - 4 T vs. C 0.383 (T) 0.417 (T) <1 (-) 0 (-) <0.05
rs9271414 chr6:32587782 HLA-DQA1 [-8174bp] C - 4 T vs. C 0.425 (C) 0.4 (C) <1 (-) 0 (-) <0.05

Association studies for this region [+]