LAMP3, chr3:182840001-182881627 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs11711441 chr3:182821275 MCCC1 All: C 108,990 15 A vs. G 0.2 (A) 0.25 (A) 0.83 (0.79-0.87) 0 (0-53) 2.54e-14
Meta_image?name=rs11711441

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs16833752 chr3:182869856 LAMP3 All: C 108,990 15 G vs. A 0.1 (G) 0.192 (G) 0.88 (0.83-0.93) 14 (0-51) 3.11e-05
rs41265435 chr3:182869776 LAMP3 All: C 108,990 15 C vs. T 0.1 (C) 0.183 (C) 0.88 (0.83-0.93) 13 (0-51) 3.12e-05
rs13065749 chr3:182824432 MCCC1 All: C 108,990 15 G vs. A 0.433 (G) 0.125 (A) 0.93 (0.89-0.96) 30 (0-62) 3.45e-05
rs10513791 chr3:182862976 LAMP3 All: C 106,157 14 T vs. G 0.1 (T) 0.208 (T) 0.88 (0.82-0.93) 16 (0-54) 5.08e-05
rs76634661 chr3:182875619 LAMP3 All: C 108,990 15 G vs. A 0.1 (G) 0.192 (G) 0.88 (0.83-0.94) 17 (0-55) 5.13e-05
rs657261 chr3:182877645 LAMP3 All: C 108,990 15 A vs. G 0.1 (A) 0.183 (A) 0.87 (0.82-0.93) 22 (0-57) 5.29e-05
rs10513790 chr3:182815556 MCCC1 All: C 108,990 15 T vs. C 0.392 (T) 0.442 (C) 0.94 (0.90-0.97) 37 (0-66) 5.44e-05
rs4859156 chr3:182815090 MCCC1 All: C 108,990 15 T vs. G 0.392 (T) 0.442 (G) 0.94 (0.91-0.97) 36 (0-66) 5.82e-05
rs13059375 chr3:182815929 MCCC1 All: C 108,990 15 A vs. G - - 1.07 (1.04-1.11) 36 (0-66) 5.86e-05
rs13059546 chr3:182823498 MCCC1 All: C 108,990 15 A vs. G 0.4 (A) 0.442 (G) 0.93 (0.90-0.97) 36 (0-66) 6.19e-05
rs7618801 chr3:182818776 MCCC1 All: C 108,990 15 A vs. G - - 1.07 (1.04-1.11) 37 (0-66) 6.55e-05
rs62293235 chr3:182826326 MCCC1 All: C 108,990 15 C vs. T 0.392 (C) 0.442 (T) 0.94 (0.90-0.97) 36 (0-65) 7.07e-05
rs11921884 chr3:182828245 MCCC1 All: C 108,990 15 T vs. G - - 1.07 (1.04-1.11) 36 (0-65) 7.13e-05
rs71314285 chr3:182878673 LAMP3 All: C 103,470 14 A vs. G 0.092 (A) 0.125 (A) 0.88 (0.83-0.94) 19 (0-57) 1.16e-04
rs3772715 chr3:182849564 LAMP3 C - 13 T vs. C 0.283 (C) 0.442 (C) >1 (-) 25 (-) <0.05
rs491841 chr3:182849884 LAMP3 C - 13 A vs. G 0.275 (G) 0.442 (G) >1 (-) 27 (-) <0.05
rs13061424 chr3:182797309 MCCC1 C - 13 A vs. T 0.283 (T) 0.383 (A) >1 (-) 33 (-) <0.05
rs2314738 chr3:182795910 MCCC1 C - 13 T vs. C - - >1 (-) 32 (-) <0.05
rs6806083 chr3:182804385 MCCC1 C - 13 A vs. G 0.292 (G) 0.383 (A) >1 (-) 32 (-) <0.05
rs10937112 chr3:182800992 MCCC1 C - 13 T vs. G 0.283 (T) 0.4 (G) <1 (-) 31 (-) <0.05
rs677950 chr3:182844349 LAMP3 C - 13 T vs. C 0.45 (T) 0.475 (C) <1 (-) 41 (-) <0.05
rs4558785 chr3:182836957 LAMP3 [-3044bp] C - 13 A vs. T 0.333 (A) 0.467 (T) <1 (-) 37 (-) <0.05
rs616035 chr3:182856597 LAMP3 C - 13 C vs. G 0.325 (C) 0.492 (G) <1 (-) 31 (-) <0.05
rs482912 chr3:182853670 LAMP3 C - 13 T vs. C 0.325 (T) 0.492 (C) <1 (-) 31 (-) <0.05
rs535651 chr3:182855352 LAMP3 C - 13 T vs. C 0.325 (T) 0.492 (C) <1 (-) 32 (-) <0.05
rs562013 chr3:182854814 LAMP3 C - 13 A vs. G 0.325 (G) 0.492 (A) >1 (-) 31 (-) <0.05
rs553548 chr3:182838542 LAMP3 [-1459bp] C - 13 C vs. G 0.333 (C) 0.475 (G) <1 (-) 37 (-) <0.05
rs663739 chr3:182852374 LAMP3 C - 13 T vs. G 0.325 (T) 0.492 (G) <1 (-) 30 (-) <0.05
rs7614849 chr3:182837327 LAMP3 [-2674bp] C - 13 T vs. G - - >1 (-) 36 (-) <0.05
rs604712 chr3:182839512 LAMP3 [-489bp] C - 13 T vs. C - - >1 (-) 36 (-) <0.05
rs598252 chr3:182854912 LAMP3 C - 13 T vs. C - - >1 (-) 32 (-) <0.05
rs536111 chr3:182908051 MCF2L2 C - 13 T vs. C 0.3 (C) 0.142 (C) >1 (-) 0 (-) <0.05
rs552648 chr3:182857249 LAMP3 C - 13 A vs. T 0.325 (A) 0.483 (T) <1 (-) 31 (-) <0.05
rs11923987 chr3:182918095 MCF2L2 C - 13 A vs. T - - >1 (-) 10 (-) <0.05
rs535658 chr3:182855347 LAMP3 C - 13 T vs. C 0.325 (T) 0.492 (C) <1 (-) 33 (-) <0.05
rs677952 chr3:182844351 LAMP3 C - 13 T vs. C 0.408 (T) 0.475 (C) <1 (-) 36 (-) <0.05
rs573940 chr3:182848045 LAMP3 C - 13 C vs. G - - >1 (-) 35 (-) <0.05
rs502289 chr3:182906649 MCF2L2 C - 13 A vs. G - - >1 (-) 0 (-) <0.05
rs59448431 chr3:182890532 MCF2L2 [-5299bp] C - 13 C vs. G 0.167 (C) 0.375 (C) <1 (-) 0 (-) <0.05
rs56107906 chr3:182891881 MCF2L2 [-3950bp] C - 13 A vs. G 0.208 (A) 0.392 (A) <1 (-) 0 (-) <0.05
rs73182946 chr3:182905520 MCF2L2 C - 13 T vs. G - - <1 (-) 0 (-) <0.05
rs13085287 chr3:182925882 MCF2L2 C - 13 T vs. C 0.3 (T) 0.292 (T) >1 (-) 0 (-) <0.05
rs6771207 chr3:182896412 MCF2L2 C - 13 A vs. G 0.208 (G) 0.392 (G) >1 (-) 0 (-) <0.05
rs11708313 chr3:182903072 MCF2L2 C - 13 A vs. G 0.217 (A) 0.383 (A) <1 (-) 0 (-) <0.05
rs11708191 chr3:182902887 MCF2L2 C - 13 T vs. C 0.217 (T) - <1 (-) 0 (-) <0.05
rs35070271 chr3:182897920 MCF2L2 C - 13 A vs. G 0.208 (G) 0.392 (G) >1 (-) 0 (-) <0.05
rs11919772 chr3:182901892 MCF2L2 C - 13 T vs. G - - >1 (-) 0 (-) <0.05
rs11707756 chr3:182909201 MCF2L2 C - 13 A vs. T 0.2 (A) 0.067 (A) <1 (-) 0 (-) <0.05
rs9878837 chr3:182915801 MCF2L2 C - 13 C vs. G 0.333 (C) 0.275 (C) >1 (-) 17 (-) <0.05
rs73182941 chr3:182902167 MCF2L2 C - 13 T vs. C 0.217 (T) 0.392 (T) <1 (-) 0 (-) <0.05

Association studies for this region [+]