LINGO3, chr19:2289774-2308156 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs1128402 chr19:2353150 LSM7 [+24531bp] All: C 103,235 14 A vs. C 0.283 (A) 0.342 (C) 1.12 (1.08-1.17) 46 (0-71) 8.40e-09
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs28432934 chr19:2292134 LINGO3 C - 11 A vs. C 0.2 (C) 0.442 (A) <1 (-) 0 (-) >0.05
rs56054943 chr19:2279190 C19orf35 C - 11 A vs. G 0.383 (G) 0.358 (A) <1 (-) 0 (-) >0.05
rs146069600 chr19:2240060 SF3A2 C - 6 T vs. G - - >1 (-) 38 (-) >0.05
rs149949768 chr19:2244059 SF3A2 C - 6 T vs. C - - >1 (-) 39 (-) >0.05
rs55861568 chr19:2280211 C19orf35 C - 11 A vs. G - - >1 (-) 0 (-) >0.05
chr19:2357055 chr19:2357055 LSM7 [+28436bp] C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs7252541 chr19:2292741 LINGO3 C - 11 C vs. G - - <1 (-) 0 (-) >0.05
rs145366197 chr19:2292293 LINGO3 C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs12151295 chr19:2314180 LINGO3 [+6024bp] C - 11 A vs. G 0.008 (A) 0.058 (A) >1 (-) 26 (-) >0.05
rs62119705 chr19:2279746 C19orf35 C - 10 T vs. C 0.35 (C) 0.342 (C) <1 (-) 20 (-) >0.05
rs6510654 chr19:2284958 C19orf35 [+2777bp] C - 11 T vs. C 0.2 (C) 0.375 (T) <1 (-) 0 (-) >0.05
rs8110704 chr19:2293602 LINGO3 C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs144270226 chr19:2285462 C19orf35 [+3281bp] C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs56393918 chr19:2335654 LSM7 [+7035bp] C - 11 C vs. G 0.158 (T) - >1 (-) 0 (-) >0.05
rs757233 chr19:2285196 C19orf35 [+3015bp] C - 11 T vs. C 0.1 (C) 0.108 (C) <1 (-) 0 (-) >0.05
rs146982937 chr19:2240303 SF3A2 C - 11 A vs. G - - <1 (-) 31 (-) >0.05
rs10420708 chr19:2283384 C19orf35 [+1203bp] C - 11 T vs. G 0.15 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs8111911 chr19:2306575 LINGO3 C - 11 A vs. G 0.283 (G) 0.375 (A) <1 (-) 48 (-) >0.05
rs10419748 chr19:2310723 LINGO3 [+2567bp] C - 12 A vs. G 0.233 (G) 0.367 (A) <1 (-) 31 (-) >0.05
rs79827094 chr19:2325130 LSM7 C - 10 A vs. C 0.15 (A) - >1 (-) 34 (-) >0.05
rs80292256 chr19:2331429 LSM7 [+2810bp] C - 10 T vs. C 0.158 (T) - >1 (-) 31 (-) >0.05
rs2074861 chr19:2246652 SF3A2 C - 11 A vs. G 0.142 (G) 0.442 (G) >1 (-) 0 (-) >0.05
rs2074860 chr19:2244072 SF3A2 C - 11 A vs. G 0.142 (G) 0.433 (G) >1 (-) 0 (-) >0.05
rs113860855 chr19:2328245 LSM7 C - 5 A vs. G - - >1 (-) 41 (-) >0.05
rs77954208 chr19:2332009 LSM7 [+3390bp] C - 10 A vs. G 0.158 (A) - >1 (-) 33 (-) >0.05
rs73520548 chr19:2330962 LSM7 [+2343bp] C - 10 A vs. G 0.167 (A) - >1 (-) 33 (-) >0.05
rs7252557 chr19:2308432 LINGO3 [+276bp] C - 11 T vs. C 0.283 (C) 0.383 (T) <1 (-) 43 (-) >0.05
rs733846 chr19:2241327 SF3A2 C - 11 T vs. G 0.133 (G) 0.442 (G) >1 (-) 0 (-) >0.05
rs8113401 chr19:2309033 LINGO3 [+877bp] C - 11 T vs. C 0.192 (C) 0.367 (T) <1 (-) 49 (-) >0.05
rs77606905 chr19:2330570 LSM7 [+1951bp] C - 10 A vs. C 0.142 (C) - <1 (-) 24 (-) >0.05
rs117650978 chr19:2335407 LSM7 [+6788bp] C - 5 T vs. C - 0.208 (T) >1 (-) 27 (-) >0.05
rs8106304 chr19:2308970 LINGO3 [+814bp] C - 12 A vs. G - - >1 (-) 37 (-) >0.05
rs76865962 chr19:2339373 LSM7 [+10754bp] C - 10 C vs. G 0.158 (G) - <1 (-) 31 (-) >0.05
rs10423003 chr19:2353557 LSM7 [+24938bp] C - 10 T vs. C 0.158 (T) - >1 (-) 11 (-) >0.05
rs55673118 chr19:2335784 LSM7 [+7165bp] C - 10 T vs. C 0.158 (T) - >1 (-) 33 (-) >0.05
rs112960796 chr19:2336610 LSM7 [+7991bp] C - 10 T vs. C 0.158 (T) - >1 (-) 33 (-) >0.05
rs4807232 chr19:2335334 LSM7 [+6715bp] C - 11 A vs. C - - >1 (-) 13 (-) >0.05
rs55710409 chr19:2337408 LSM7 [+8789bp] C - 10 T vs. C 0.158 (T) - >1 (-) 33 (-) >0.05
rs80297278 chr19:2243772 SF3A2 C - 11 A vs. C - - <1 (-) 23 (-) >0.05
rs59357019 chr19:2247086 SF3A2 C - 9 T vs. C - 0.108 (T) <1 (-) 26 (-) >0.05
rs11668542 chr19:2335349 LSM7 [+6730bp] C - 10 A vs. C - - >1 (-) 30 (-) >0.05
rs117374034 chr19:2244692 SF3A2 C - 11 T vs. C 0.033 (T) - <1 (-) 22 (-) >0.05
rs8106339 chr19:2329914 LSM7 [+1295bp] C - 5 T vs. C 0.033 (T) 0.225 (T) >1 (-) 37 (-) >0.05
rs10518240 chr19:2239966 SF3A2 C - 11 A vs. T 0.025 (T) - >1 (-) 0 (-) >0.05
rs75833880 chr19:2353347 LSM7 [+24728bp] C - 8 T vs. C 0.008 (T) - >1 (-) 0 (-) >0.05
rs12462821 chr19:2352077 LSM7 [+23458bp] C - 12 T vs. C 0.042 (T) 0.0 (T) >1 (-) 8 (-) >0.05
rs10424233 chr19:2353736 LSM7 [+25117bp] C - 12 A vs. G 0.042 (A) 0.008 (A) >1 (-) 8 (-) >0.05
rs3210 chr19:2341674 LSM7 [+13055bp] C - 10 C vs. G 0.167 (C) - >1 (-) 31 (-) >0.05
rs116770326 chr19:2343010 LSM7 [+14391bp] C - 10 A vs. T 0.15 (A) - >1 (-) 31 (-) >0.05
rs2159032 chr19:2242044 SF3A2 C - 10 C vs. G - 0.1 (G) >1 (-) 28 (-) >0.05

Association studies for this region [+]