LINGO3, chr19:2289774-2308156 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs1128402 chr19:2353150 LSM7 [+24531bp] All: C 103,235 14 A vs. C 0.283 (A) 0.342 (C) 1.12 (1.08-1.17) 46 (0-71) 8.40e-09
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs141322132 chr19:2326623 LSM7 C - 11 C vs. G - - <1 (-) 0 (-) >0.05
rs45539635 chr19:2244646 SF3A2 C - 11 T vs. C - - <1 (-) 23 (-) >0.05
rs55738540 chr19:2323117 LSM7 C - 11 T vs. C - - <1 (-) 0 (-) >0.05
rs111418527 chr19:2350926 LSM7 [+22307bp] C - 9 T vs. C - - >1 (-) 0 (-) >0.05
rs55704748 chr19:2344484 LSM7 [+15865bp] C - 11 A vs. G 0.275 (G) 0.033 (G) >1 (-) 10 (-) >0.05
rs77542691 chr19:2247733 SF3A2 C - 8 T vs. C 0.008 (T) 0.075 (T) <1 (-) 0 (-) >0.05
rs112545595 chr19:2333058 LSM7 [+4439bp] C - 10 T vs. C - - <1 (-) 34 (-) >0.05
rs3761018 chr19:2248882 SF3A2 [+204bp] C - 8 A vs. G - 0.083 (G) >1 (-) 0 (-) >0.05
rs10406324 chr19:2249112 AMH [-196bp] C - 9 A vs. G 0.042 (G) 0.0 (G) >1 (-) 0 (-) >0.05
rs55873587 chr19:2342806 LSM7 [+14187bp] C - 11 T vs. C 0.283 (T) - <1 (-) 12 (-) >0.05
chr19:2347417 chr19:2347417 LSM7 [+18798bp] C - 9 T vs. C - - >1 (-) 0 (-) >0.05
rs56091758 chr19:2320452 LSM7 [-1064bp] C - 11 T vs. C 0.008 (T) - >1 (-) 0 (-) >0.05
rs12460882 chr19:2278509 C19orf35 C - 11 T vs. C 0.067 (C) 0.275 (C) <1 (-) 0 (-) >0.05
rs78048915 chr19:2278508 C19orf35 C - 11 A vs. G 0.067 (G) 0.275 (G) <1 (-) 0 (-) >0.05
rs61736572 chr19:2249583 AMH C - 8 A vs. G - 0.083 (A) <1 (-) 0 (-) >0.05
rs56058112 chr19:2350204 LSM7 [+21585bp] C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs61736575 chr19:2249634 AMH C - 8 A vs. G 0.025 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs12460460 chr19:2280450 C19orf35 C - 11 A vs. C - - >1 (-) 0 (-) >0.05
rs12460315 chr19:2280469 C19orf35 C - 11 A vs. G 0.025 (A) 0.258 (A) >1 (-) 0 (-) >0.05
rs12460495 chr19:2280649 C19orf35 C - 11 T vs. C 0.042 (T) 0.242 (T) >1 (-) 0 (-) >0.05
rs77833359 chr19:2279695 C19orf35 C - 11 A vs. G - 0.275 (G) <1 (-) 0 (-) >0.05
rs148457017 chr19:2309966 LINGO3 [+1810bp] C - 11 A vs. G - - >1 (-) 0 (-) >0.05
rs73516539 chr19:2239907 SF3A2 C - 10 A vs. T - 0.108 (A) >1 (-) 48 (-) >0.05
rs113116376 chr19:2312386 LINGO3 [+4230bp] C - 11 T vs. G - - <1 (-) 0 (-) >0.05
rs2159025 chr19:2318944 LSM7 [-2572bp] C - 11 C vs. G - - <1 (-) 0 (-) >0.05
rs1971003 chr19:2318819 LSM7 [-2697bp] C - 11 C vs. G - - <1 (-) 0 (-) >0.05
rs1609704 chr19:2318455 LSM7 [-3061bp] C - 11 A vs. G - - >1 (-) 0 (-) >0.05
rs36064137 chr19:2277915 C19orf35 C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs77671243 chr19:2250236 AMH C - 8 A vs. G - 0.075 (A) <1 (-) 0 (-) >0.05
rs7249235 chr19:2242829 SF3A2 C - 11 A vs. C 0.067 (A) 0.242 (A) <1 (-) 0 (-) >0.05
rs72987455 chr19:2321198 LSM7 [-318bp] C - 12 T vs. C 0.2 (T) 0.225 (T) >1 (-) 44 (-) >0.05
rs12459954 chr19:2274864 C19orf35 C - 11 A vs. G - - >1 (-) 0 (-) >0.05
rs34658798 chr19:2278391 C19orf35 C - 11 C vs. G - - <1 (-) 0 (-) >0.05
rs4807222 chr19:2308344 LINGO3 [+188bp] C - 11 T vs. C - 0.217 (T) <1 (-) 49 (-) >0.05
rs4806833 chr19:2246403 SF3A2 C - 11 A vs. G 0.075 (G) 0.258 (G) >1 (-) 0 (-) >0.05
rs757595 chr19:2241406 SF3A2 C - 11 T vs. C 0.067 (T) 0.25 (T) <1 (-) 0 (-) >0.05
rs2041112 chr19:2240406 SF3A2 C - 11 C vs. G 0.067 (C) 0.242 (C) <1 (-) 0 (-) >0.05
rs61297982 chr19:2241143 SF3A2 C - 10 A vs. G - 0.083 (G) <1 (-) 46 (-) >0.05
rs3761021 chr19:2241052 SF3A2 C - 10 A vs. G - 0.108 (G) <1 (-) 46 (-) >0.05
rs60012971 chr19:2241127 SF3A2 C - 10 A vs. G - 0.117 (A) >1 (-) 46 (-) >0.05
rs72987453 chr19:2321148 LSM7 [-368bp] C - 12 T vs. G 0.208 (T) 0.208 (T) >1 (-) 45 (-) >0.05
rs112697225 chr19:2320575 LSM7 [-941bp] C - 12 T vs. C 0.208 (T) 0.2 (T) >1 (-) 44 (-) >0.05
rs34268982 chr19:2278402 C19orf35 C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs12609709 chr19:2244013 SF3A2 C - 10 A vs. C - 0.108 (C) <1 (-) 44 (-) >0.05
rs2079159 chr19:2255873 JSRP1 C - 5 A vs. G - 0.425 (A) <1 (-) 10 (-) >0.05
rs141257211 chr19:2356158 LSM7 [+27539bp] C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs112381299 chr19:2320557 LSM7 [-959bp] C - 12 A vs. C - - >1 (-) 45 (-) >0.05
rs4807216 chr19:2248683 SF3A2 [+5bp] C - 10 T vs. C 0.133 (C) 0.342 (C) >1 (-) 0 (-) >0.05
rs12459955 chr19:2274881 C19orf35 C - 11 A vs. G - - >1 (-) 0 (-) >0.05
rs6510652 chr19:2244903 SF3A2 C - 11 T vs. G 0.075 (T) 0.25 (T) <1 (-) 0 (-) >0.05

Association studies for this region [+]