LSM7, chr19:2321516-2328619 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs62120679 chr19:2363319 TMPRSS9 [-26450bp] All: C 99,286 13 T vs. C 0.292 (T) 0.3 (C) 1.14 (1.09-1.19) 47 (0-72) 2.52e-09
Meta_image?name=rs62120679

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs62120679 chr19:2363319 TMPRSS9 [-26450bp] All: C 99,286 13 T vs. C 0.292 (T) 0.3 (C) 1.14 (1.09-1.19) 47 (0-72) 2.52e-09
rs1128402 chr19:2353150 LSM7 [+24531bp] All: C 103,235 14 A vs. C 0.283 (A) 0.342 (C) 1.12 (1.08-1.17) 46 (0-71) 8.40e-09
rs2074546 chr19:2352639 LSM7 [+24020bp] All: C 100,402 13 A vs. G 0.3 (A) 0.308 (G) 1.12 (1.07-1.16) 45 (0-71) 8.64e-09
rs8104896 chr19:2352393 LSM7 [+23774bp] All: C 103,235 14 T vs. G 0.258 (T) 0.333 (G) 1.12 (1.08-1.17) 47 (1-72) 8.92e-09
rs3746289 chr19:2343142 LSM7 [+14523bp] All: C 103,235 14 A vs. G 0.275 (A) 0.333 (G) 1.12 (1.08-1.17) 49 (6-73) 1.01e-08
rs3746285 chr19:2339949 LSM7 [+11330bp] All: C 103,235 14 T vs. C 0.275 (T) 0.317 (C) 1.11 (1.07-1.15) 43 (0-70) 4.32e-08
rs12986109 chr19:2360967 TMPRSS9 [-28802bp] All: C 99,286 13 A vs. C 0.342 (A) 0.283 (C) 1.13 (1.08-1.18) 49 (3-73) 7.27e-08
rs11084936 chr19:2346440 LSM7 [+17821bp] All: C 103,235 14 A vs. G - - 0.92 (0.89-0.95) 26 (0-61) 2.77e-07
rs12978670 chr19:2358485 LSM7 [+29866bp] All: C 103,235 14 C vs. T 0.458 (C) 0.3 (T) 1.09 (1.05-1.13) 27 (0-61) 4.72e-07
rs10420958 chr19:2353368 LSM7 [+24749bp] All: C 103,235 14 A vs. G 0.475 (A) 0.308 (A) 0.92 (0.89-0.95) 26 (0-61) 4.93e-07
rs114089710 chr19:2357933 LSM7 [+29314bp] All: C 103,235 14 C vs. T 0.383 (C) 0.325 (T) 1.09 (1.06-1.13) 30 (0-63) 5.28e-07
rs62119753 chr19:2355428 LSM7 [+26809bp] All: C 103,235 14 C vs. A 0.458 (C) 0.3 (A) 1.09 (1.05-1.13) 25 (0-60) 7.89e-07
rs12460552 chr19:2356475 LSM7 [+27856bp] All: C 103,235 14 A vs. G 0.458 (A) 0.3 (G) 1.09 (1.05-1.12) 24 (0-60) 8.11e-07
rs62119754 chr19:2356277 LSM7 [+27658bp] All: C 103,235 14 A vs. G 0.458 (A) 0.3 (G) 1.09 (1.05-1.12) 24 (0-60) 8.12e-07
rs876692 chr19:2322165 LSM7 All: C 99,286 13 A vs. G 0.05 (A) 0.467 (A) 1.21 (1.12-1.30) 34 (0-66) 1.33e-06
rs10402757 chr19:2353372 LSM7 [+24753bp] All: C 103,235 14 C vs. T 0.475 (C) 0.308 (C) 0.92 (0.89-0.95) 26 (0-61) 1.38e-06
rs7249727 chr19:2346730 LSM7 [+18111bp] All: C 103,235 14 A vs. G 0.292 (A) 0.317 (G) 1.09 (1.06-1.14) 33 (0-65) 1.74e-06
rs10406430 chr19:2321308 LSM7 [-208bp] All: C 99,286 13 A vs. G 0.042 (A) 0.475 (A) 1.17 (1.09-1.25) 40 (0-69) 2.96e-06
rs757321 chr19:2360011 TMPRSS9 [-29758bp] All: C 103,235 14 C vs. T 0.458 (C) 0.283 (T) 1.08 (1.05-1.12) 26 (0-61) 2.97e-06
rs730960 chr19:2360806 TMPRSS9 [-28963bp] All: C 103,235 14 G vs. A 0.45 (G) 0.308 (A) 1.08 (1.05-1.12) 26 (0-61) 3.05e-06
rs757322 chr19:2360854 TMPRSS9 [-28915bp] All: C 103,235 14 A vs. G 0.45 (A) 0.3 (G) 1.08 (1.05-1.12) 26 (0-61) 3.40e-06
rs12977404 chr19:2360960 TMPRSS9 [-28809bp] All: C 99,964 13 T vs. G 0.467 (T) 0.275 (G) 1.09 (1.05-1.13) 34 (0-66) 4.55e-06
rs12977961 chr19:2326897 LSM7 All: C 103,235 14 C vs. T 0.425 (C) 0.283 (T) 1.08 (1.05-1.12) 18 (0-56) 5.61e-06
rs11666344 chr19:2328281 LSM7 All: C 103,235 14 G vs. A 0.242 (G) 0.458 (G) 1.10 (1.05-1.14) 47 (2-72) 5.62e-06
rs12976273 chr19:2326902 LSM7 All: C 103,235 14 G vs. A 0.425 (G) 0.275 (A) 1.08 (1.05-1.12) 18 (0-56) 5.62e-06
rs10427098 chr19:2327403 LSM7 All: C 103,235 14 A vs. G 0.258 (A) - 1.10 (1.05-1.14) 47 (2-72) 7.30e-06
rs10404826 chr19:2324384 LSM7 All: C 103,235 14 A vs. G 0.25 (A) 0.45 (A) 1.10 (1.05-1.14) 49 (5-72) 1.08e-05
rs12983575 chr19:2325172 LSM7 All: C 103,235 14 A vs. C 0.242 (A) 0.45 (A) 1.09 (1.05-1.14) 48 (4-72) 1.32e-05
rs56291613 chr19:2323197 LSM7 All: C 103,235 14 A vs. G 0.4 (A) 0.308 (G) 1.08 (1.04-1.12) 20 (0-57) 1.35e-05
rs73520518 chr19:2320831 LSM7 [-685bp] All: C 99,286 13 C vs. T - 0.108 (T) 0.81 (0.74-0.89) 40 (0-69) 1.40e-05
rs8100786 chr19:2324847 LSM7 All: C 103,235 14 A vs. G 0.25 (A) 0.45 (A) 1.09 (1.05-1.14) 46 (0-71) 1.61e-05
rs886882 chr19:2322085 LSM7 All: C 103,235 14 G vs. A 0.242 (G) 0.3 (A) 1.08 (1.04-1.12) 51 (10-74) 2.16e-05
rs7251424 chr19:2321430 LSM7 [-86bp] All: C 103,235 14 C vs. T 0.258 (C) 0.3 (T) 1.08 (1.04-1.12) 51 (9-73) 3.60e-05
rs11084935 chr19:2345595 LSM7 [+16976bp] C - 12 C vs. G 0.458 (G) 0.283 (C) <1 (-) 35 (-) <1.00e-04
rs11671 chr19:2354787 LSM7 [+26168bp] C - 12 C vs. G 0.458 (C) 0.308 (G) >1 (-) 35 (-) <1.00e-04
rs2159026 chr19:2318969 LSM7 [-2547bp] All: C 103,235 14 G vs. A 0.2 (G) 0.442 (G) 1.09 (1.04-1.14) 44 (0-70) 9.35e-05
rs12609156 chr19:2359625 TMPRSS9 [-30144bp] C - 12 C vs. G - - <1 (-) 35 (-) <0.05
rs12609235 chr19:2359501 TMPRSS9 [-30268bp] C - 12 C vs. G 0.458 (C) 0.3 (G) >1 (-) 36 (-) <0.05
rs10402629 chr19:2324458 LSM7 All: C 114,483 20 G vs. A 0.242 (G) 0.45 (G) 1.07 (1.03-1.11) 47 (10-68) 1.20e-04
rs4807228 chr19:2319273 LSM7 [-2243bp] All: C 103,235 14 T vs. C 0.258 (T) 0.317 (C) 1.07 (1.03-1.11) 47 (2-72) 2.09e-04
rs3795039 chr19:2329603 LSM7 [+984bp] C - 12 C vs. G 0.458 (C) 0.308 (G) >1 (-) 35 (-) <0.05
rs12985061 chr19:2358088 LSM7 [+29469bp] C - 12 T vs. C 0.283 (T) 0.3 (C) >1 (-) 46 (-) <0.05
rs11084937 chr19:2346664 LSM7 [+18045bp] C - 12 T vs. C 0.292 (C) 0.325 (T) <1 (-) 51 (-) <0.05
rs10853959 chr19:2346354 LSM7 [+17735bp] C - 12 T vs. C 0.308 (C) 0.308 (T) <1 (-) 50 (-) <0.05
rs55818311 chr19:2341047 LSM7 [+12428bp] C - 12 T vs. C 0.3 (C) 0.275 (T) <1 (-) 47 (-) <0.05
rs62119714 chr19:2309376 LINGO3 [+1220bp] C - 8 T vs. C 0.033 (T) - >1 (-) 49 (-) <0.05
rs1609753 chr19:2340050 LSM7 [+11431bp] C - 12 T vs. C 0.258 (T) 0.342 (C) >1 (-) 51 (-) <0.05
rs1971005 chr19:2322353 LSM7 C - 10 A vs. T - - >1 (-) 0 (-) <0.05
rs55769436 chr19:2356265 LSM7 [+27646bp] C - 12 A vs. G 0.175 (A) 0.108 (A) >1 (-) 51 (-) <0.05
rs11084932 chr19:2328101 LSM7 C - 12 C vs. G 0.25 (C) 0.475 (C) >1 (-) 54 (-) <0.05

Association studies for this region [+]