LSM7, chr19:2321516-2328619 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs62120679 chr19:2363319 TMPRSS9 [-26450bp] All: C 99,286 13 T vs. C 0.292 (T) 0.3 (C) 1.14 (1.09-1.19) 47 (0-72) 2.52e-09
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs4503922 chr19:2371613 TMPRSS9 [-18156bp] C - 11 T vs. C - - <1 (-) 7 (-) >0.05
rs4806840 chr19:2372678 TMPRSS9 [-17091bp] C - 11 T vs. C 0.1 (C) 0.342 (C) <1 (-) 6 (-) >0.05
rs7258841 chr19:2290499 LINGO3 C - 11 T vs. C 0.1 (T) 0.342 (T) >1 (-) 0 (-) >0.05
rs8101012 chr19:2370605 TMPRSS9 [-19164bp] C - 11 T vs. G - - >1 (-) 9 (-) >0.05
rs8101533 chr19:2370355 TMPRSS9 [-19414bp] C - 11 T vs. C - - >1 (-) 9 (-) >0.05
rs75587362 chr19:2373276 TMPRSS9 [-16493bp] C - 11 T vs. C - - >1 (-) 8 (-) >0.05
rs62119707 chr19:2296837 LINGO3 C - 11 T vs. C - - <1 (-) 14 (-) >0.05
rs117419939 chr19:2318087 LSM7 [-3429bp] C - 11 T vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs1128392 chr19:2344022 LSM7 [+15403bp] C - 5 A vs. G 0.075 (A) - >1 (-) 47 (-) >0.05
rs2523178 chr19:2275079 C19orf35 C - 11 A vs. G 0.317 (A) 0.108 (A) >1 (-) 17 (-) >0.05
rs11084929 chr19:2294552 LINGO3 C - 11 T vs. G 0.108 (T) 0.108 (T) >1 (-) 0 (-) >0.05
rs3764603 chr19:2288338 LINGO3 [-1436bp] C - 11 A vs. T 0.117 (T) 0.108 (T) <1 (-) 0 (-) >0.05
rs7253353 chr19:2287000 LINGO3 [-2774bp] C - 11 A vs. T 0.117 (T) 0.117 (T) <1 (-) 0 (-) >0.05
rs75183089 chr19:2346990 LSM7 [+18371bp] C - 5 A vs. C 0.042 (C) 0.158 (C) <1 (-) 14 (-) >0.05
rs118034773 chr19:2329771 LSM7 [+1152bp] C - 6 A vs. T 0.008 (T) - >1 (-) 0 (-) >0.05
rs28432934 chr19:2292134 LINGO3 C - 11 A vs. C 0.2 (C) 0.442 (A) <1 (-) 0 (-) >0.05
rs34879276 chr19:2369997 TMPRSS9 [-19772bp] C - 12 A vs. G - 0.292 (A) >1 (-) 0 (-) >0.05
rs12975085 chr19:2368582 TMPRSS9 [-21187bp] C - 12 C vs. G 0.258 (C) 0.3 (C) >1 (-) 0 (-) >0.05
rs56054943 chr19:2279190 C19orf35 C - 11 A vs. G 0.383 (G) 0.358 (A) <1 (-) 0 (-) >0.05
rs67845727 chr19:2369674 TMPRSS9 [-20095bp] C - 12 C vs. G 0.258 (G) 0.292 (G) <1 (-) 0 (-) >0.05
rs17763599 chr19:2369415 TMPRSS9 [-20354bp] C - 12 T vs. G 0.258 (T) 0.3 (T) >1 (-) 0 (-) >0.05
rs55861568 chr19:2280211 C19orf35 C - 11 A vs. G - - >1 (-) 0 (-) >0.05
chr19:2357055 chr19:2357055 LSM7 [+28436bp] C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs7252541 chr19:2292741 LINGO3 C - 11 C vs. G - - <1 (-) 0 (-) >0.05
rs145366197 chr19:2292293 LINGO3 C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs12151295 chr19:2314180 LINGO3 [+6024bp] C - 11 A vs. G 0.008 (A) 0.058 (A) >1 (-) 26 (-) >0.05
rs62119705 chr19:2279746 C19orf35 C - 10 T vs. C 0.35 (C) 0.342 (C) <1 (-) 20 (-) >0.05
rs6510654 chr19:2284958 C19orf35 [+2777bp] C - 11 T vs. C 0.2 (C) 0.375 (T) <1 (-) 0 (-) >0.05
rs8110704 chr19:2293602 LINGO3 C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs144270226 chr19:2285462 C19orf35 [+3281bp] C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs73522364 chr19:2363456 TMPRSS9 [-26313bp] C - 10 C vs. G 0.15 (G) - <1 (-) 33 (-) >0.05
rs56393918 chr19:2335654 LSM7 [+7035bp] C - 11 C vs. G 0.158 (T) - >1 (-) 0 (-) >0.05
rs757233 chr19:2285196 C19orf35 [+3015bp] C - 11 T vs. C 0.1 (C) 0.108 (C) <1 (-) 0 (-) >0.05
rs138165188 chr19:2377271 TMPRSS9 [-12498bp] C - 6 A vs. G - - >1 (-) 35 (-) >0.05
rs10420708 chr19:2283384 C19orf35 [+1203bp] C - 11 T vs. G 0.15 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs8111911 chr19:2306575 LINGO3 C - 11 A vs. G 0.283 (G) 0.375 (A) <1 (-) 48 (-) >0.05
rs10419748 chr19:2310723 LINGO3 [+2567bp] C - 12 A vs. G 0.233 (G) 0.367 (A) <1 (-) 31 (-) >0.05
rs79827094 chr19:2325130 LSM7 C - 10 A vs. C 0.15 (A) - >1 (-) 34 (-) >0.05
rs80292256 chr19:2331429 LSM7 [+2810bp] C - 10 T vs. C 0.158 (T) - >1 (-) 31 (-) >0.05
rs113860855 chr19:2328245 LSM7 C - 5 A vs. G - - >1 (-) 41 (-) >0.05
rs77954208 chr19:2332009 LSM7 [+3390bp] C - 10 A vs. G 0.158 (A) - >1 (-) 33 (-) >0.05
rs73520548 chr19:2330962 LSM7 [+2343bp] C - 10 A vs. G 0.167 (A) - >1 (-) 33 (-) >0.05
rs7252557 chr19:2308432 LINGO3 [+276bp] C - 11 T vs. C 0.283 (C) 0.383 (T) <1 (-) 43 (-) >0.05
rs8113401 chr19:2309033 LINGO3 [+877bp] C - 11 T vs. C 0.192 (C) 0.367 (T) <1 (-) 49 (-) >0.05
rs77606905 chr19:2330570 LSM7 [+1951bp] C - 10 A vs. C 0.142 (C) - <1 (-) 24 (-) >0.05
rs117650978 chr19:2335407 LSM7 [+6788bp] C - 5 T vs. C - 0.208 (T) >1 (-) 27 (-) >0.05
rs8106304 chr19:2308970 LINGO3 [+814bp] C - 12 A vs. G - - >1 (-) 37 (-) >0.05
rs76865962 chr19:2339373 LSM7 [+10754bp] C - 10 C vs. G 0.158 (G) - <1 (-) 31 (-) >0.05
rs10423003 chr19:2353557 LSM7 [+24938bp] C - 10 T vs. C 0.158 (T) - >1 (-) 11 (-) >0.05
rs55673118 chr19:2335784 LSM7 [+7165bp] C - 10 T vs. C 0.158 (T) - >1 (-) 33 (-) >0.05

Association studies for this region [+]