MALSU1, chr7:23338358-23351348 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs199347 chr7:23293746 GPNMB All: C 120,238 21 G vs. A 0.392 (G) 0.325 (G) 0.90 (0.87-0.92) 11 (0-46) 5.62e-14
Meta_image?name=rs199347

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs199347 chr7:23293746 GPNMB All: C 120,238 21 G vs. A 0.392 (G) 0.325 (G) 0.90 (0.87-0.92) 11 (0-46) 5.62e-14
rs858275 chr7:23294144 GPNMB All: C 108,990 15 C vs. T 0.375 (C) 0.325 (C) 0.89 (0.87-0.92) 13 (0-51) 5.52e-12
rs199355 chr7:23296533 GPNMB All: C 108,990 15 A vs. G 0.375 (A) 0.2 (A) 0.89 (0.87-0.92) 10 (0-48) 7.42e-12
rs858274 chr7:23294668 GPNMB All: C 108,990 15 T vs. C - - 1.12 (1.08-1.16) 11 (0-49) 7.52e-12
rs199348 chr7:23293098 GPNMB All: C 108,990 15 A vs. C 0.392 (A) 0.2 (A) 0.89 (0.87-0.92) 11 (0-49) 8.31e-12
rs199351 chr7:23300049 GPNMB All: C 108,990 15 C vs. A 0.392 (C) 0.425 (C) 0.89 (0.87-0.92) 9 (0-46) 9.25e-12
rs10262243 chr7:23290987 GPNMB All: C 108,990 15 A vs. G 0.367 (A) 0.2 (A) 0.89 (0.86-0.92) 11 (0-49) 1.10e-11
rs858273 chr7:23294900 GPNMB All: C 108,990 15 C vs. T - - 1.12 (1.08-1.16) 8 (0-44) 1.18e-11
rs10085838 chr7:23298415 GPNMB All: C 108,990 15 A vs. C 0.367 (A) 0.167 (A) 0.89 (0.86-0.92) 8 (0-44) 1.32e-11
rs1881203 chr7:23292808 GPNMB All: C 108,990 15 C vs. T 0.367 (C) 0.2 (C) 0.89 (0.87-0.92) 11 (0-49) 1.47e-11
rs28458177 chr7:23294872 GPNMB All: C 108,990 15 A vs. G 0.367 (A) 0.15 (A) 0.89 (0.86-0.92) 10 (0-47) 2.59e-11
rs156429 chr7:23306020 GPNMB All: C 108,990 15 C vs. T 0.383 (C) 0.3 (C) 0.89 (0.87-0.92) 0 (0-46) 3.09e-11
rs10250602 chr7:23303701 GPNMB All: C 108,990 15 C vs. T 0.358 (C) 0.15 (C) 0.89 (0.86-0.92) 7 (0-57) 3.87e-11
rs156425 chr7:23309119 GPNMB All: C 108,990 15 C vs. T 0.392 (C) 0.417 (C) 0.90 (0.87-0.93) 0 (0-42) 6.13e-11
rs166663 chr7:23316742 GPNMB [+2015bp] All: C 108,990 15 C vs. A 0.392 (C) 0.292 (C) 0.90 (0.87-0.93) 0 (0-41) 1.69e-10
rs1728320 chr7:23319789 GPNMB [+5062bp] All: C 108,990 15 G vs. T 0.375 (G) 0.392 (G) 0.90 (0.87-0.93) 0 (0-40) 1.77e-10
rs28635122 chr7:23310181 GPNMB All: C 108,990 15 T vs. C 0.367 (T) 0.167 (T) 0.90 (0.87-0.93) 0 (0-50) 1.93e-10
rs2268747 chr7:23313462 GPNMB All: C 108,990 15 G vs. A 0.367 (G) 0.258 (G) 0.90 (0.87-0.93) 0 (0-50) 2.34e-10
rs156407 chr7:23315639 GPNMB [+912bp] All: C 108,990 15 A vs. G 0.392 (A) 0.4 (A) 0.90 (0.87-0.93) 0 (0-40) 2.44e-10
rs4282457 chr7:23322416 GPNMB [+7689bp] All: C 108,990 15 A vs. G - 0.342 (G) 1.11 (1.08-1.15) 0 (0-42) 2.51e-10
rs199654 chr7:23344218 MALSU1 All: C 108,990 15 G vs. A 0.317 (G) 0.15 (G) 0.89 (0.86-0.93) 0 (0-49) 8.88e-09
rs199651 chr7:23366691 IGF2BP3 All: C 108,990 15 T vs. A - - 1.10 (1.06-1.14) 0 (0-25) 1.41e-08
rs199652 chr7:23366145 IGF2BP3 All: C 108,990 15 A vs. G - - 1.10 (1.06-1.14) 0 (0-7) 2.14e-08
rs76983703 chr7:23376713 IGF2BP3 All: C 108,990 15 A vs. G 0.242 (A) 0.092 (A) 0.90 (0.87-0.94) 24 (0-59) 3.21e-08
rs149821 chr7:23339460 MALSU1 All: C 108,990 15 T vs. C 0.433 (T) 0.342 (T) 0.92 (0.89-0.95) 0 (0-9) 3.49e-07
rs156421 chr7:23312487 GPNMB C - 13 A vs. G 0.392 (G) 0.342 (G) >1 (-) 0 (-) <1.00e-06
rs466225 chr7:23332403 MALSU1 [-5955bp] C - 13 T vs. G 0.375 (T) 0.233 (T) <1 (-) 0 (-) <1.00e-04
rs10224388 chr7:23316440 GPNMB [+1713bp] C - 13 A vs. G - - <1 (-) 0 (-) <1.00e-04
rs274054 chr7:23390467 IGF2BP3 C - 13 C vs. G 0.375 (C) 0.383 (C) <1 (-) 0 (-) <1.00e-04
rs7794684 chr7:23310805 GPNMB C - 13 A vs. G 0.367 (G) 0.283 (G) >1 (-) 6 (-) <1.00e-04
rs5850 chr7:23314547 GPNMB C - 13 T vs. C 0.367 (T) 0.158 (T) <1 (-) 6 (-) <1.00e-04
rs274058 chr7:23391509 IGF2BP3 C - 13 C vs. G 0.375 (G) 0.292 (G) >1 (-) 0 (-) <1.00e-04
rs2268745 chr7:23317600 GPNMB [+2873bp] C - 13 A vs. G 0.367 (A) 0.25 (A) <1 (-) 6 (-) <1.00e-04
rs199649 chr7:23369704 IGF2BP3 C - 13 C vs. G - - <1 (-) 0 (-) <1.00e-04
rs2268744 chr7:23332280 MALSU1 [-6078bp] C - 13 T vs. C 0.383 (T) 0.15 (T) <1 (-) 1 (-) <1.00e-04
rs7796541 chr7:23389073 IGF2BP3 C - 13 A vs. C 0.367 (A) 0.167 (A) <1 (-) 0 (-) <1.00e-04
rs1964536 chr7:23380185 IGF2BP3 All: C 108,990 15 C vs. T 0.458 (C) 0.25 (C) 0.93 (0.90-0.96) 0 (0-47) 4.80e-06
rs199657 chr7:23337507 MALSU1 [-851bp] C - 13 C vs. G 0.417 (G) 0.25 (G) >1 (-) 0 (-) <1.00e-04
rs199656 chr7:23337615 MALSU1 [-743bp] C - 13 T vs. G 0.417 (G) 0.25 (G) >1 (-) 0 (-) <1.00e-04
rs4428570 chr7:23361805 IGF2BP3 C - 13 T vs. G - - <1 (-) 0 (-) <1.00e-04
rs10233942 chr7:23373730 IGF2BP3 C - 13 A vs. G - - <1 (-) 0 (-) <1.00e-04
rs9639460 chr7:23294516 GPNMB All: C 108,990 15 A vs. G 0.4 (A) 0.158 (A) 1.08 (1.05-1.12) 10 (0-48) 5.57e-06
rs200717 chr7:23392271 IGF2BP3 C - 13 T vs. C 0.433 (C) 0.283 (C) >1 (-) 0 (-) <1.00e-04
rs466240 chr7:23338774 MALSU1 C - 13 T vs. C 0.417 (C) 0.283 (C) >1 (-) 0 (-) <1.00e-04
rs10279941 chr7:23370508 IGF2BP3 C - 13 C vs. G 0.358 (G) 0.183 (G) >1 (-) 0 (-) <1.00e-04
rs274032 chr7:23374559 IGF2BP3 C - 13 C vs. G 0.425 (G) 0.383 (G) >1 (-) 0 (-) <1.00e-04
rs199650 chr7:23367189 IGF2BP3 C - 13 T vs. C 0.433 (C) - >1 (-) 0 (-) <1.00e-04
rs3807459 chr7:23389751 IGF2BP3 C - 13 T vs. C 0.425 (C) 0.35 (C) >1 (-) 0 (-) <1.00e-04
rs460031 chr7:23335308 MALSU1 [-3050bp] All: C 108,990 15 T vs. G 0.4 (T) 0.225 (T) 1.08 (1.04-1.11) 0 (0-48) 4.70e-05
rs199359 chr7:23338514 MALSU1 C - 13 T vs. C 0.425 (C) 0.15 (C) >1 (-) 0 (-) <1.00e-04

Association studies for this region [+]