MAPT, chr17:43971748-44105700 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs17649553 chr17:43994648 MAPT All: C 114,483 20 T vs. C 0.217 (T) - 0.77 (0.75-0.80) 0 (0-37) 6.11e-49
Meta_image?name=rs17649553

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs12150627 chr17:44149537 KANSL1 C - 12 C vs. G 0.2 (G) - >1 (-) 0 (-) <5.00e-08
rs17575850 chr17:44144387 KANSL1 C - 12 A vs. C 0.217 (A) - <1 (-) 0 (-) <5.00e-08
rs62060794 chr17:44142566 KANSL1 C - 12 T vs. C 0.225 (T) - <1 (-) 0 (-) <5.00e-08
rs171425 chr17:44019088 MAPT C - 12 T vs. G - - >1 (-) 0 (-) <5.00e-08
rs62060844 chr17:44153836 KANSL1 C - 12 T vs. C 0.217 (T) - <1 (-) 0 (-) <5.00e-08
rs62060795 chr17:44142663 KANSL1 C - 12 T vs. C 0.208 (T) - <1 (-) 0 (-) <5.00e-08
rs12150127 chr17:44141732 KANSL1 C - 12 A vs. G 0.217 (A) - <1 (-) 0 (-) <5.00e-08
rs886249 chr17:43946291 SPPL2C [+21853bp] C - 12 A vs. G 0.208 (G) - >1 (-) 0 (-) <5.00e-08
rs77652965 chr17:43941608 SPPL2C [+17170bp] C - 12 C vs. G 0.217 (G) - >1 (-) 0 (-) <5.00e-08
rs2316951 chr17:44139083 KANSL1 C - 12 C vs. G 0.217 (C) - <1 (-) 0 (-) <5.00e-08
rs974295 chr17:44150152 KANSL1 C - 12 A vs. T 0.217 (T) - >1 (-) 0 (-) <5.00e-08
rs7218319 chr17:44126365 KANSL1 C - 12 T vs. C 0.225 (T) - <1 (-) 0 (-) <5.00e-08
rs77950913 chr17:44146451 KANSL1 C - 12 T vs. C 0.217 (C) - >1 (-) 0 (-) <5.00e-08
rs56041778 chr17:44147511 KANSL1 C - 12 C vs. G 0.217 (C) - <1 (-) 0 (-) <5.00e-08
rs76307183 chr17:44142121 KANSL1 C - 12 A vs. G 0.217 (A) - <1 (-) 0 (-) <5.00e-08
rs9907738 chr17:44151546 KANSL1 C - 12 T vs. G 0.225 (G) - >1 (-) 0 (-) <5.00e-08
rs7220752 chr17:44138201 KANSL1 C - 12 T vs. C 0.217 (C) - >1 (-) 0 (-) <5.00e-08
rs1981997 chr17:44056767 MAPT C - 11 A vs. G 0.217 (A) - <1 (-) 0 (-) <5.00e-08
rs12373142 chr17:43924200 SPPL2C C - 11 C vs. G 0.217 (G) - >1 (-) 0 (-) <5.00e-08
rs9913081 chr17:43933802 SPPL2C [+9364bp] All: C 103,235 14 G vs. T - - 1.39 (1.30-1.48) 5 (0-57) 3.56e-22
rs17563986 chr17:43991272 MAPT C - 10 A vs. G 0.217 (G) - >1 (-) 0 (-) <5.00e-08
rs1981998 chr17:44056833 MAPT C - 11 A vs. G 0.217 (A) - <1 (-) 0 (-) <5.00e-08
rs12373140 chr17:43924231 SPPL2C C - 11 A vs. G 0.217 (A) - <1 (-) 0 (-) <5.00e-08
rs12373168 chr17:43924337 SPPL2C C - 11 A vs. C 0.208 (C) - >1 (-) 0 (-) <5.00e-08
rs17690703 chr17:43925297 SPPL2C [+859bp] C - 12 T vs. C 0.258 (T) 0.025 (T) <1 (-) 4 (-) <5.00e-08
rs8067056 chr17:44083948 MAPT All: C 103,235 14 C vs. T 0.35 (C) 0.375 (C) 0.86 (0.83-0.89) 0 (0-45) 1.71e-17
rs1560312 chr17:43978988 MAPT All: C 103,235 14 G vs. A 0.275 (G) - 0.86 (0.83-0.89) 24 (0-60) 3.37e-17
rs1529537 chr17:44064799 MAPT All: C 24,132 9 C vs. T 0.017 (C) - 0.46 (0.38-0.55) 0 (0-62) 1.61e-16
rs2435201 chr17:44078982 MAPT All: C 103,235 14 T vs. A 0.333 (T) 0.467 (T) 0.87 (0.84-0.90) 1 (0-55) 2.46e-16
rs190266 chr17:44019063 MAPT All: C 97,715 13 T vs. G - - 0.82 (0.78-0.86) 26 (0-62) 7.64e-16
rs713522 chr17:44065263 MAPT All: C 103,235 14 C vs. T 0.375 (C) 0.4 (T) 0.88 (0.85-0.90) 0 (0-53) 9.62e-16
rs242922 chr17:43946370 SPPL2C [+21932bp] All: C 103,235 14 A vs. C 0.333 (A) 0.383 (C) 1.15 (1.11-1.19) 28 (0-62) 1.55e-15
rs2471737 chr17:44070583 MAPT All: C 103,235 14 G vs. A 0.367 (G) 0.425 (G) 0.88 (0.85-0.91) 0 (0-54) 1.78e-15
rs6503451 chr17:43948347 MAPT [-23401bp] C - 12 T vs. C 0.192 (C) - >1 (-) 0 (-) <5.00e-08
rs9915721 chr17:43991553 MAPT C - 12 A vs. G 0.292 (G) - >1 (-) 27 (-) <5.00e-08
rs2301689 chr17:43935838 SPPL2C [+11400bp] All: C 103,235 14 T vs. C 0.333 (T) 0.217 (C) 1.14 (1.10-1.18) 48 (4-72) 4.38e-13
rs962885 chr17:43935631 SPPL2C [+11193bp] All: C 103,235 14 T vs. C 0.342 (T) 0.192 (C) 1.14 (1.10-1.18) 48 (4-72) 6.75e-13
rs242944 chr17:43923180 SPPL2C All: C 103,235 14 G vs. A 0.342 (G) 0.225 (G) 0.89 (0.86-0.92) 8 (0-46) 6.88e-13
rs9303523 chr17:43976684 MAPT C - 12 T vs. C 0.292 (C) - >1 (-) 16 (-) <5.00e-08
rs28646281 chr17:43977846 MAPT C - 12 T vs. G 0.292 (G) - >1 (-) 18 (-) <5.00e-08
rs7210728 chr17:43968415 MAPT [-3333bp] C - 12 A vs. G 0.3 (A) - <1 (-) 8 (-) <5.00e-08
rs4792891 chr17:43973498 MAPT C - 11 T vs. G 0.3 (G) - >1 (-) 6 (-) <5.00e-08
rs8080903 chr17:43996140 MAPT All: C 103,235 14 T vs. C 0.392 (T) 0.225 (C) 1.12 (1.09-1.16) 39 (0-68) 2.39e-12
rs1560313 chr17:43996561 MAPT All: C 103,235 14 A vs. G 0.392 (A) 0.208 (G) 1.12 (1.09-1.16) 39 (0-68) 3.28e-12
rs9898399 chr17:43950322 MAPT [-21426bp] C - 12 A vs. G 0.267 (G) - >1 (-) 0 (-) <5.00e-08
rs242932 chr17:43939136 SPPL2C [+14698bp] All: C 103,235 14 T vs. A 0.333 (T) 0.192 (A) 1.13 (1.09-1.17) 45 (0-71) 3.85e-12
rs242935 chr17:43936410 SPPL2C [+11972bp] All: C 103,235 14 C vs. T - - 0.88 (0.85-0.91) 46 (0-71) 4.76e-12
rs242931 chr17:43939225 SPPL2C [+14787bp] All: C 103,235 14 A vs. G 0.333 (A) 0.192 (G) 1.13 (1.09-1.17) 45 (0-70) 5.81e-12
rs9904290 chr17:44002271 MAPT All: C 103,235 14 A vs. G 0.392 (A) 0.242 (G) 1.12 (1.09-1.16) 38 (0-67) 6.24e-12
rs7521 chr17:44105395 MAPT All: C 103,235 14 A vs. G 0.417 (A) 0.117 (A) 1.12 (1.08-1.15) 0 (0-37) 1.60e-11

Association studies for this region [+]