MAPT, chr17:43971748-44105700 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs17649553 chr17:43994648 MAPT All: C 114,483 20 T vs. C 0.217 (T) - 0.77 (0.75-0.80) 0 (0-37) 6.11e-49
Meta_image?name=rs17649553

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs1001945 chr17:44005821 MAPT All: C 103,235 14 C vs. G 0.4 (C) 0.242 (G) 1.12 (1.08-1.15) 36 (0-66) 1.83e-11
rs8078967 chr17:44008101 MAPT All: C 103,235 14 T vs. C 0.383 (T) 0.242 (C) 1.12 (1.08-1.15) 35 (0-66) 2.30e-11
rs8064986 chr17:44119367 KANSL1 All: C 103,235 14 G vs. A - - 0.90 (0.87-0.93) 0 (0-35) 3.74e-11
rs754593 chr17:44054696 MAPT C - 12 A vs. G 0.375 (G) 0.175 (G) >1 (-) 0 (-) <5.00e-08
rs2435200 chr17:44071851 MAPT C - 12 A vs. G 0.358 (A) 0.417 (A) <1 (-) 8 (-) <5.00e-08
rs242929 chr17:43940229 SPPL2C [+15791bp] C - 12 A vs. G 0.333 (G) 0.158 (A) <1 (-) 34 (-) <5.00e-08
rs11657882 chr17:43945416 SPPL2C [+20978bp] C - 12 A vs. G 0.333 (A) 0.217 (G) >1 (-) 36 (-) <5.00e-08
rs183086 chr17:43945745 SPPL2C [+21307bp] C - 12 A vs. G - - <1 (-) 36 (-) <5.00e-08
rs7218286 chr17:43945524 SPPL2C [+21086bp] C - 12 A vs. G 0.333 (A) 0.217 (G) >1 (-) 35 (-) <5.00e-08
rs242554 chr17:44039365 MAPT All: C 103,235 14 C vs. T - - 0.90 (0.87-0.93) 14 (0-52) 4.70e-09
rs8064870 chr17:43926789 SPPL2C [+2351bp] All: C 103,235 14 C vs. T 0.483 (C) 0.208 (C) 0.91 (0.88-0.94) 14 (0-53) 5.47e-09
rs2521811 chr17:43934044 SPPL2C [+9606bp] C - 12 T vs. C 0.333 (T) 0.225 (C) >1 (-) 46 (-) <5.00e-08
rs2055797 chr17:44002632 MAPT C - 12 A vs. T 0.333 (A) 0.367 (T) >1 (-) 37 (-) <5.00e-08
rs8068916 chr17:43926987 SPPL2C [+2549bp] All: C 103,235 14 G vs. T 0.475 (G) 0.208 (G) 0.91 (0.88-0.94) 14 (0-52) 6.92e-09
rs2664006 chr17:44041771 MAPT All: C 103,235 14 C vs. T - - 0.91 (0.88-0.94) 10 (0-48) 8.57e-09
rs1467967 chr17:43986179 MAPT C - 12 A vs. G 0.35 (G) 0.392 (A) <1 (-) 30 (-) <5.00e-08
rs1967982 chr17:44006223 MAPT C - 12 A vs. G - - >1 (-) 36 (-) <5.00e-08
rs8065800 chr17:44010478 MAPT C - 12 A vs. G 0.325 (G) 0.358 (A) <1 (-) 36 (-) <5.00e-08
rs9896485 chr17:44050828 MAPT All: C 103,235 14 C vs. G 0.317 (C) 0.392 (G) 1.10 (1.06-1.14) 7 (0-58) 1.53e-08
rs11079726 chr17:43976235 MAPT C - 12 A vs. G 0.325 (A) 0.458 (G) >1 (-) 34 (-) <5.00e-08
rs3744457 chr17:43972915 MAPT C - 12 T vs. C 0.3 (C) 0.292 (T) <1 (-) 35 (-) <5.00e-08
rs10514889 chr17:44051404 MAPT All: C 103,235 14 A vs. G 0.317 (A) 0.475 (A) 1.10 (1.06-1.14) 7 (0-44) 1.98e-08
rs242933 chr17:43938470 SPPL2C [+14032bp] C - 12 A vs. G 0.325 (A) 0.358 (G) >1 (-) 44 (-) <5.00e-08
rs242923 chr17:43945981 SPPL2C [+21543bp] C - 12 A vs. G 0.325 (A) 0.358 (G) >1 (-) 43 (-) <5.00e-08
rs930119 chr17:43979972 MAPT C - 12 A vs. G 0.35 (A) 0.45 (G) >1 (-) 34 (-) <5.00e-08
rs878918 chr17:44031596 MAPT All: C 103,235 14 G vs. A 0.283 (G) 0.15 (G) 1.11 (1.07-1.15) 45 (0-71) 1.26e-07
rs3935637 chr17:43928573 SPPL2C [+4135bp] C - 12 T vs. C 0.475 (C) 0.192 (C) >1 (-) 17 (-) <1.00e-06
rs4616318 chr17:43928810 SPPL2C [+4372bp] C - 12 A vs. G 0.475 (G) 0.192 (G) >1 (-) 17 (-) <1.00e-06
rs62062775 chr17:44021960 MAPT All: C 103,235 14 A vs. G 0.192 (A) - 1.12 (1.07-1.16) 27 (0-62) 4.08e-07
rs4792827 chr17:44131305 KANSL1 C - 12 T vs. C 0.408 (T) 0.117 (T) >1 (-) 0 (-) <1.00e-06
rs3785879 chr17:43985636 MAPT All: C 103,235 14 A vs. C 0.425 (A) 0.375 (A) 1.09 (1.05-1.12) 0 (0-24) 1.03e-06
rs3785880 chr17:43993376 MAPT All: C 103,235 14 G vs. T 0.45 (G) 0.367 (G) 1.09 (1.05-1.12) 0 (0-18) 1.12e-06
rs11653258 chr17:44017725 MAPT C - 12 T vs. G 0.208 (T) 0.033 (T) >1 (-) 20 (-) <1.00e-04
rs41543317 chr17:44087500 MAPT C - 12 A vs. G 0.375 (A) 0.133 (A) >1 (-) 0 (-) <1.00e-04
rs56087321 chr17:44084403 MAPT C - 12 C vs. G 0.375 (C) 0.192 (C) >1 (-) 0 (-) <1.00e-04
rs12946693 chr17:44084008 MAPT C - 12 T vs. C - - >1 (-) 0 (-) <1.00e-04
rs242562 chr17:44026739 MAPT All: C 103,235 14 A vs. G 0.425 (A) 0.433 (G) 1.09 (1.05-1.12) 10 (0-48) 4.10e-06
rs2435207 chr17:44058928 MAPT All: C 103,235 14 A vs. G 0.392 (A) 0.25 (A) 1.08 (1.05-1.12) 0 (0-10) 4.99e-06
rs2435206 chr17:44058111 MAPT All: C 103,235 14 T vs. C 0.383 (T) 0.217 (T) 1.08 (1.05-1.12) 0 (0-8) 5.74e-06
rs72836318 chr17:44121579 KANSL1 All: C 103,235 14 C vs. T 0.283 (C) - 1.10 (1.05-1.14) 0 (0-49) 6.00e-06
rs3785885 chr17:44058640 MAPT All: C 103,235 14 A vs. G 0.258 (A) 0.142 (A) 1.09 (1.05-1.13) 19 (0-57) 6.29e-06
rs77169816 chr17:44042942 MAPT All: C 103,235 14 T vs. C 0.183 (T) 0.175 (T) 1.10 (1.06-1.15) 17 (0-55) 7.19e-06
rs242557 chr17:44019712 MAPT All: C 103,235 14 A vs. G 0.408 (A) 0.467 (A) 1.08 (1.04-1.12) 7 (0-58) 8.40e-06
rs16940758 chr17:44040626 MAPT All: C 103,235 14 T vs. C 0.192 (T) 0.108 (T) 1.10 (1.06-1.15) 21 (0-58) 8.99e-06
rs916896 chr17:44098797 MAPT C - 12 T vs. C 0.358 (T) 0.1 (T) >1 (-) 0 (-) <1.00e-04
rs76281607 chr17:44042782 MAPT All: C 103,235 14 C vs. T - - 0.91 (0.87-0.95) 21 (0-58) 1.04e-05
rs11654745 chr17:44131096 KANSL1 C - 12 A vs. G 0.375 (A) 0.092 (A) >1 (-) 0 (-) <1.00e-04
rs8078067 chr17:44125466 KANSL1 C - 12 A vs. G - - >1 (-) 0 (-) <1.00e-04
rs113042517 chr17:44139453 KANSL1 C - 12 A vs. G - - >1 (-) 0 (-) <1.00e-04
rs16940845 chr17:44116843 KANSL1 C - 12 A vs. C 0.375 (A) 0.117 (A) >1 (-) 0 (-) <1.00e-04

Association studies for this region [+]