MAPT, chr17:43971748-44105700 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs17649553 chr17:43994648 MAPT All: C 114,483 20 T vs. C 0.217 (T) - 0.77 (0.75-0.80) 0 (0-37) 6.11e-49
Meta_image?name=rs17649553

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9913462 chr17:43991643 MAPT C - 12 C vs. G 0.083 (C) - >1 (-) 0 (-) <0.05
rs242934 chr17:43936664 SPPL2C [+12226bp] C - 12 C vs. G 0.45 (C) 0.217 (C) >1 (-) 0 (-) <0.05
rs114469358 chr17:43962562 MAPT [-9186bp] C - 12 T vs. C 0.075 (C) - <1 (-) 0 (-) <0.05
rs117801051 chr17:43962575 MAPT [-9173bp] C - 12 T vs. C 0.075 (T) - >1 (-) 0 (-) <0.05
rs7220421 chr17:43945726 SPPL2C [+21288bp] C - 12 A vs. G - - >1 (-) 0 (-) <0.05
rs2019820 chr17:43959825 MAPT [-11923bp] C - 12 T vs. C - - >1 (-) 0 (-) <0.05
rs117732767 chr17:43930715 SPPL2C [+6277bp] C - 12 A vs. C 0.033 (A) - >1 (-) 27 (-) <0.05
rs7224541 chr17:43974594 MAPT C - 12 A vs. G 0.05 (A) - >1 (-) 0 (-) <0.05
rs16940711 chr17:43930006 SPPL2C [+5568bp] C - 12 A vs. C 0.033 (C) - <1 (-) 26 (-) <0.05
rs34845889 chr17:43928906 SPPL2C [+4468bp] C - 12 C vs. G 0.025 (C) 0.033 (C) >1 (-) 28 (-) <0.05
rs9910173 chr17:43969897 MAPT [-1851bp] C - 12 A vs. C - - <1 (-) 0 (-) <0.05
rs117350367 chr17:43929952 SPPL2C [+5514bp] C - 12 A vs. G 0.033 (A) - >1 (-) 30 (-) <0.05
rs242926 chr17:43966105 MAPT [-5643bp] C - 11 C vs. G 0.1 (C) - >1 (-) 11 (-) <0.05
rs16940704 chr17:43928124 SPPL2C [+3686bp] C - 12 T vs. C 0.033 (C) - <1 (-) 30 (-) <0.05
rs4792889 chr17:43934332 SPPL2C [+9894bp] C - 12 T vs. C 0.083 (T) - >1 (-) 0 (-) <0.05
rs4792890 chr17:43934387 SPPL2C [+9949bp] C - 12 A vs. G 0.083 (A) - >1 (-) 0 (-) <0.05
rs2471738 chr17:44076063 MAPT C - 12 T vs. C 0.342 (T) 0.242 (T) >1 (-) 0 (-) <0.05
rs118109282 chr17:44091417 MAPT C - 9 T vs. C 0.025 (T) - >1 (-) 0 (-) <0.05
rs12947764 chr17:44004442 MAPT C - 12 T vs. G 0.3 (G) - <1 (-) 24 (-) <0.05
rs61421488 chr17:43991509 MAPT C - 9 A vs. C 0.083 (C) - <1 (-) 47 (-) <0.05
rs117372337 chr17:44019672 MAPT C - 9 A vs. G 0.05 (A) - >1 (-) 1 (-) <0.05
rs117199550 chr17:44072799 MAPT C - 12 T vs. C 0.058 (T) - >1 (-) 0 (-) <0.05
rs11568305 chr17:44074018 MAPT C - 12 A vs. G 0.058 (A) - >1 (-) 0 (-) <0.05
rs80189278 chr17:44060492 MAPT C - 12 A vs. G 0.033 (A) - >1 (-) 0 (-) <0.05
rs11867549 chr17:44013235 MAPT C - 12 A vs. G 0.275 (G) - <1 (-) 23 (-) <0.05
rs63750222 chr17:44061025 MAPT C - 12 T vs. C 0.083 (T) 0.175 (T) >1 (-) 0 (-) <0.05
rs62054826 chr17:43930700 SPPL2C [+6262bp] C - 12 A vs. C 0.15 (A) - >1 (-) 0 (-) <0.05
rs73317025 chr17:44081178 MAPT C - 12 T vs. C 0.1 (C) - <1 (-) 0 (-) <0.05
rs117105048 chr17:44094278 MAPT C - 8 A vs. G 0.017 (G) - <1 (-) 0 (-) <0.05
rs73317026 chr17:44081268 MAPT C - 12 A vs. G 0.117 (A) - >1 (-) 0 (-) <0.05
rs11652070 chr17:43928667 SPPL2C [+4229bp] C - 12 T vs. C 0.092 (T) - >1 (-) 0 (-) <0.05
rs4792894 chr17:43999203 MAPT C - 12 A vs. G 0.042 (A) - >1 (-) 0 (-) <0.05
rs74536520 chr17:44132448 KANSL1 C - 6 T vs. C - - >1 (-) 0 (-) <0.05
rs11079728 chr17:44090196 MAPT C - 12 T vs. C 0.033 (C) - <1 (-) 5 (-) <0.05
rs145127226 chr17:43980641 MAPT C - 10 A vs. G - - >1 (-) 0 (-) <0.05
rs144452577 chr17:44140154 KANSL1 C - 10 A vs. G - - >1 (-) 0 (-) <0.05
rs9896752 chr17:43930200 SPPL2C [+5762bp] C - 12 T vs. C 0.05 (C) 0.125 (C) <1 (-) 0 (-) >0.05
rs71375325 chr17:44005297 MAPT C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs139197430 chr17:43975888 MAPT C - 5 T vs. C - - >1 (-) 0 (-) >0.05
rs117562189 chr17:44074133 MAPT C - 12 A vs. G 0.042 (A) - >1 (-) 0 (-) >0.05
rs7216893 chr17:44078213 MAPT C - 12 A vs. G 0.025 (G) - <1 (-) 0 (-) >0.05
rs3744456 chr17:43972176 MAPT C - 12 C vs. G - 0.067 (G) <1 (-) 14 (-) >0.05
rs11652638 chr17:44099668 MAPT C - 12 T vs. C - - >1 (-) 4 (-) >0.05
rs2435202 chr17:44080836 MAPT C - 12 A vs. G 0.025 (A) 0.358 (A) >1 (-) 22 (-) >0.05
rs117166686 chr17:43989313 MAPT C - 6 T vs. C 0.025 (C) - <1 (-) 38 (-) >0.05
rs2435214 chr17:44068339 MAPT C - 12 A vs. G 0.258 (A) 0.242 (A) >1 (-) 12 (-) >0.05
rs9890016 chr17:43929696 SPPL2C [+5258bp] C - 12 T vs. C 0.075 (C) 0.125 (C) <1 (-) 0 (-) >0.05
rs7209707 chr17:44059666 MAPT C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs118039425 chr17:44087508 MAPT C - 11 A vs. G 0.025 (A) - >1 (-) 0 (-) >0.05
rs117990338 chr17:44068356 MAPT C - 11 T vs. C 0.033 (T) - >1 (-) 0 (-) >0.05

Association studies for this region [+]