PODN, chr1:53527854-53551174 +/- 50000 base pairs
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Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs34107528 chr1:53537396 PODN C - 13 A vs. G 0.033 (A) - >1 (-) 7 (-) <0.05

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs1288393 chr1:53545763 PODN C - 13 A vs. G 0.317 (G) 0.292 (A) <1 (-) 0 (-) >0.05
rs1288360 chr1:53596328 SLC1A7 C - 13 A vs. G 0.083 (A) 0.0 (A) >1 (-) 0 (-) >0.05
rs1679966 chr1:53591918 SLC1A7 C - 13 A vs. C 0.075 (C) 0.158 (C) <1 (-) 0 (-) >0.05
rs3766800 chr1:53593913 SLC1A7 C - 13 A vs. G 0.158 (G) 0.3 (G) >1 (-) 49 (-) >0.05
rs61768150 chr1:53598015 SLC1A7 C - 13 A vs. G 0.158 (A) 0.283 (A) <1 (-) 50 (-) >0.05
rs6686963 chr1:53486512 SCP2 C - 13 T vs. C 0.067 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs1288357 chr1:53598161 SLC1A7 C - 13 A vs. G 0.083 (A) 0.0 (A) >1 (-) 0 (-) >0.05
rs4431784 chr1:53520889 SCP2 [+3514bp] C - 13 T vs. G - - <1 (-) 0 (-) >0.05
rs3766808 chr1:53595729 SLC1A7 C - 13 T vs. C 0.158 (T) 0.292 (T) <1 (-) 52 (-) >0.05
rs1288404 chr1:53557484 SLC1A7 C - 13 T vs. C 0.275 (T) 0.275 (T) >1 (-) 8 (-) >0.05
rs72903176 chr1:53501202 SCP2 C - 13 C vs. G 0.033 (G) 0.067 (G) <1 (-) 28 (-) >0.05
rs72670879 chr1:53596130 SLC1A7 C - 13 A vs. G 0.167 (A) - <1 (-) 51 (-) >0.05
rs899973 chr1:53548295 PODN C - 13 C vs. G 0.3 (C) 0.3 (G) >1 (-) 0 (-) >0.05
rs55898414 chr1:53562089 SLC1A7 C - 9 T vs. C 0.025 (T) - >1 (-) 0 (-) >0.05
rs17107627 chr1:53489717 SCP2 C - 13 A vs. G 0.067 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs1288399 chr1:53553485 SLC1A7 C - 13 A vs. G 0.275 (A) 0.258 (A) >1 (-) 8 (-) >0.05
rs56047272 chr1:53598989 SLC1A7 C - 13 A vs. G 0.083 (A) - >1 (-) 0 (-) >0.05
chr1:53582502 chr1:53582502 SLC1A7 C - 5 T vs. C - - <1 (-) 19 (-) >0.05
rs113227930 chr1:53479032 SCP2 C - 13 A vs. C - - >1 (-) 0 (-) >0.05
rs3766785 chr1:53582306 SLC1A7 C - 13 A vs. T 0.233 (T) 0.258 (T) >1 (-) 57 (-) >0.05
rs6674545 chr1:53492867 SCP2 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs1288401 chr1:53553754 SLC1A7 C - 13 T vs. C 0.317 (T) 0.3 (C) >1 (-) 0 (-) >0.05
rs7536048 chr1:53489601 SCP2 C - 13 T vs. C 0.067 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs72903125 chr1:53491334 SCP2 C - 13 T vs. C 0.067 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs72903174 chr1:53501159 SCP2 C - 13 A vs. G 0.033 (G) 0.092 (G) <1 (-) 26 (-) >0.05
rs17107640 chr1:53493625 SCP2 C - 13 A vs. G 0.067 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs17107831 chr1:53535499 PODN C - 13 T vs. C 0.05 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs55713135 chr1:53499225 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs1288397 chr1:53551293 PODN [+119bp] C - 12 A vs. G 0.317 (G) 0.125 (G) >1 (-) 0 (-) >0.05
rs3737989 chr1:53600078 SLC1A7 C - 13 A vs. G 0.158 (G) 0.283 (G) >1 (-) 52 (-) >0.05
rs72903124 chr1:53491292 SCP2 C - 13 A vs. C 0.067 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs3766775 chr1:53567546 SLC1A7 C - 13 A vs. G 0.308 (A) 0.292 (G) >1 (-) 0 (-) >0.05
rs7519017 chr1:53510925 SCP2 C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs998296 chr1:53523963 PODN [-3891bp] C - 13 A vs. G 0.017 (A) 0.075 (A) >1 (-) 0 (-) >0.05
rs3766793 chr1:53590630 SLC1A7 C - 13 T vs. C 0.108 (C) 0.233 (C) <1 (-) 4 (-) >0.05
rs1871749 chr1:53502569 SCP2 C - 13 T vs. C 0.092 (C) - <1 (-) 0 (-) >0.05
rs78751306 chr1:53559846 SLC1A7 C - 13 A vs. G 0.033 (A) 0.175 (A) >1 (-) 0 (-) >0.05
rs74082418 chr1:53536111 PODN C - 4 T vs. C - - >1 (-) 0 (-) >0.05
rs1288354 chr1:53600350 SLC1A7 C - 13 A vs. G 0.092 (A) 0.0 (A) >1 (-) 0 (-) >0.05
rs75166253 chr1:53540071 PODN C - 13 T vs. G - 0.208 (G) >1 (-) 5 (-) >0.05
rs17107560 chr1:53481477 SCP2 C - 13 A vs. G 0.067 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs1077466 chr1:53542620 PODN C - 13 A vs. G - 0.208 (A) <1 (-) 0 (-) >0.05
rs57093639 chr1:53490369 SCP2 C - 13 A vs. G 0.075 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs11588325 chr1:53557944 SLC1A7 C - 13 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs1288398 chr1:53552319 SLC1A7 [-536bp] C - 13 T vs. C 0.342 (C) 0.3 (T) <1 (-) 0 (-) >0.05
rs6694494 chr1:53528264 PODN C - 9 A vs. C - 0.083 (A) >1 (-) 0 (-) >0.05
rs13496 chr1:53516742 SCP2 C - 13 A vs. G 0.067 (A) 0.375 (A) >1 (-) 0 (-) >0.05
rs4130007 chr1:53489087 SCP2 C - 13 C vs. G 0.067 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs17107683 chr1:53501409 SCP2 C - 13 A vs. G 0.033 (A) 0.042 (A) >1 (-) 18 (-) >0.05
rs74419704 chr1:53501402 SCP2 C - 13 A vs. G 0.033 (G) - <1 (-) 18 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.