POU5F1, chr6:31132119-31148508 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
rs9263850 chr6:31156188 POU5F1 [+7680bp] All: C 103,235 14 A vs. G - - 1.10 (1.06-1.14) 13 (0-52) 1.81e-06
rs28362345 chr6:31165836 HCG27 All: C 103,235 14 C vs. T 0.283 (C) 0.458 (C) 0.93 (0.90-0.96) 12 (0-50) 7.48e-06
rs3998077 chr6:31173433 HCG27 [+1688bp] All: C 103,235 14 A vs. G 0.483 (A) 0.358 (A) 0.93 (0.90-0.96) 26 (0-61) 8.49e-06
rs6921948 chr6:31171257 HCG27 All: C 103,235 14 C vs. A 0.483 (C) 0.367 (C) 0.93 (0.90-0.96) 28 (0-62) 8.56e-06
rs6930462 chr6:31173933 HCG27 [+2188bp] All: C 103,235 14 G vs. T 0.492 (G) 0.325 (G) 0.93 (0.90-0.96) 26 (0-61) 8.71e-06
rs6914076 chr6:31175206 HCG27 [+3461bp] All: C 103,235 14 G vs. A - - 0.93 (0.90-0.96) 27 (0-61) 9.08e-06
rs28362342 chr6:31165438 HCG27 [-99bp] All: C 103,235 14 G vs. T 0.258 (G) 0.458 (G) 0.93 (0.89-0.96) 8 (0-46) 9.20e-06
rs4249311 chr6:31175608 HCG27 [+3863bp] All: C 103,235 14 C vs. T - - 0.93 (0.90-0.96) 26 (0-61) 9.34e-06
rs6914215 chr6:31175178 HCG27 [+3433bp] All: C 103,235 14 C vs. A - - 1.08 (1.05-1.12) 20 (0-57) 9.41e-06
rs6936825 chr6:31175044 HCG27 [+3299bp] All: C 103,235 14 C vs. T 0.483 (C) 0.333 (C) 0.93 (0.90-0.96) 27 (0-61) 1.04e-05
rs4410769 chr6:31176246 HCG27 [+4501bp] All: C 103,235 14 T vs. C 0.492 (T) 0.358 (T) 0.93 (0.90-0.96) 16 (0-54) 1.10e-05
rs7764668 chr6:31159630 HCG27 [-5907bp] All: C 103,235 14 A vs. G - - 1.09 (1.05-1.13) 17 (0-55) 1.25e-05
rs6933818 chr6:31195804 HCG27 [+24059bp] All: C 103,235 14 C vs. T - - 1.09 (1.05-1.13) 0 (0-55) 2.21e-05
rs9263871 chr6:31170528 HCG27 All: C 103,235 14 G vs. A 0.292 (G) 0.442 (G) 0.93 (0.90-0.96) 0 (0-55) 2.88e-05
rs9501075 chr6:31165177 HCG27 [-360bp] All: C 103,235 14 C vs. T - 0.442 (T) 1.07 (1.04-1.11) 0 (0-54) 3.91e-05
rs9500883 chr6:31165100 HCG27 [-437bp] All: C 103,235 14 C vs. A 0.35 (C) - 0.94 (0.91-0.97) 0 (0-54) 4.56e-05
rs28362336 chr6:31164901 HCG27 [-636bp] All: C 103,235 14 G vs. T 0.358 (G) 0.492 (G) 0.94 (0.91-0.97) 0 (0-54) 4.59e-05
rs28362335 chr6:31164849 HCG27 [-688bp] All: C 103,235 14 A vs. G 0.358 (A) 0.492 (A) 0.94 (0.91-0.97) 0 (0-54) 4.60e-05
rs1265075 chr6:31113113 CCHCR1 All: C 103,235 14 A vs. C 0.067 (A) 0.158 (A) 0.87 (0.82-0.93) 37 (0-67) 5.04e-05
rs9500882 chr6:31164549 HCG27 [-988bp] All: C 103,235 14 A vs. G - - 1.07 (1.04-1.11) 0 (0-50) 6.59e-05
rs7764794 chr6:31159692 HCG27 [-5845bp] All: C 103,235 14 A vs. G - - 1.09 (1.05-1.14) 30 (0-63) 7.11e-05
rs35990442 chr6:31184949 HCG27 [+13204bp] All: C 103,235 14 G vs. A - - 1.16 (1.08-1.25) 32 (0-64) 7.19e-05
rs28362333 chr6:31164779 HCG27 [-758bp] All: C 103,235 14 C vs. T 0.333 (C) 0.483 (C) 0.94 (0.90-0.97) 0 (0-52) 7.34e-05
rs28360067 chr6:31164580 HCG27 [-957bp] All: C 103,235 14 A vs. G 0.175 (A) - 0.92 (0.88-0.96) 29 (0-63) 7.62e-05
rs4711259 chr6:31161176 HCG27 [-4361bp] All: C 103,235 14 C vs. A 0.342 (C) 0.492 (C) 0.94 (0.91-0.97) 7 (0-58) 7.65e-05
rs9468891 chr6:31167170 HCG27 All: C 103,235 14 A vs. G - - 1.07 (1.03-1.10) 3 (0-56) 7.68e-05
rs28397276 chr6:31164794 HCG27 [-743bp] All: C 103,235 14 C vs. T 0.175 (C) 0.383 (C) 0.91 (0.87-0.96) 22 (0-59) 8.05e-05
rs9404982 chr6:31166539 HCG27 All: C 103,235 14 A vs. G 0.358 (A) 0.492 (A) 0.94 (0.91-0.97) 4 (0-57) 9.71e-05
rs6919603 chr6:31175912 HCG27 [+4167bp] All: C 103,235 14 G vs. A 0.267 (G) 0.3 (G) 0.93 (0.90-0.97) 0 (0-54) 1.02e-04
rs1265090 chr6:31108169 PSORS1C1 [+300bp] All: C 103,235 14 G vs. A - - 1.10 (1.05-1.16) 31 (0-64) 1.08e-04
rs6936597 chr6:31161161 HCG27 [-4376bp] All: C 103,235 14 T vs. C 0.175 (T) 0.375 (T) 0.92 (0.88-0.96) 25 (0-60) 1.09e-04
rs4713443 chr6:31155539 POU5F1 [+7031bp] All: C 103,235 14 G vs. T 0.35 (G) 0.475 (G) 0.94 (0.91-0.97) 5 (0-57) 1.10e-04
rs4713444 chr6:31155548 POU5F1 [+7040bp] All: C 103,235 14 G vs. A 0.358 (G) 0.483 (G) 0.94 (0.91-0.97) 5 (0-57) 1.10e-04
rs6936474 chr6:31161152 HCG27 [-4385bp] All: C 103,235 14 T vs. C 0.175 (T) 0.375 (T) 0.92 (0.88-0.96) 25 (0-60) 1.10e-04
rs9501077 chr6:31167512 HCG27 All: C 103,235 14 G vs. A 0.358 (G) 0.492 (G) 0.94 (0.91-0.97) 4 (0-57) 1.13e-04
rs1265082 chr6:31111606 CCHCR1 All: C 103,235 14 G vs. A - - 1.10 (1.05-1.16) 32 (0-64) 1.14e-04
rs3868075 chr6:31167815 HCG27 All: C 103,235 14 G vs. A 0.358 (G) 0.492 (G) 0.94 (0.91-0.97) 3 (0-57) 1.14e-04
rs4713446 chr6:31162839 HCG27 [-2698bp] All: C 103,235 14 T vs. C 0.358 (T) 0.492 (T) 0.94 (0.91-0.97) 3 (0-57) 1.14e-04
rs9380224 chr6:31168676 HCG27 All: C 103,235 14 T vs. C - - 1.07 (1.03-1.10) 2 (0-56) 1.14e-04
rs1265110 chr6:31119422 CCHCR1 All: C 103,235 14 T vs. C 0.117 (T) 0.258 (T) 0.91 (0.87-0.95) 31 (0-64) 1.15e-04
rs7741806 chr6:31158786 HCG27 [-6751bp] All: C 103,235 14 T vs. C - - 1.07 (1.03-1.10) 3 (0-56) 1.16e-04
rs7755428 chr6:31158385 HCG27 [-7152bp] All: C 103,235 14 C vs. T - 0.5 (T) 1.07 (1.03-1.10) 3 (0-57) 1.16e-04
rs9295962 chr6:31169438 HCG27 All: C 103,235 14 T vs. C 0.358 (T) - 0.94 (0.91-0.97) 2 (0-56) 1.17e-04
rs4713447 chr6:31162963 HCG27 [-2574bp] All: C 103,235 14 G vs. A 0.358 (G) 0.492 (G) 0.94 (0.91-0.97) 3 (0-56) 1.18e-04
rs6930065 chr6:31173669 HCG27 [+1924bp] All: C 103,235 14 C vs. T 0.292 (C) 0.325 (C) 0.94 (0.91-0.97) 4 (0-57) 1.21e-04
rs9404981 chr6:31166378 HCG27 All: C 103,235 14 G vs. A - - 1.07 (1.03-1.10) 3 (0-56) 1.22e-04
rs9366768 chr6:31168494 HCG27 All: C 103,235 14 A vs. G 0.358 (A) 0.467 (A) 0.94 (0.91-0.97) 2 (0-56) 1.23e-04
rs9295963 chr6:31169494 HCG27 All: C 103,235 14 T vs. C - - 1.07 (1.03-1.10) 1 (0-56) 1.27e-04
rs9263873 chr6:31170713 HCG27 All: C 103,235 14 C vs. T 0.375 (C) 0.492 (C) 0.94 (0.91-0.97) 0 (0-54) 1.35e-04

Association studies for this region [+]