PTPRA, chr20:2844830-3019722 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs62205655 chr20:2821726 PCED1A C - 7 A vs. G - - >1 (-) 4 (-) >0.05
rs79355864 chr20:3022027 GNRH2 [-2241bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs6115777 chr20:3048319 OXT [-3947bp] C - 12 T vs. G 0.383 (G) 0.425 (T) <1 (-) 0 (-) >0.05
rs78894814 chr20:2890223 PTPRA C - 13 T vs. C 0.083 (T) - >1 (-) 28 (-) >0.05
rs6051448 chr20:2838313 VPS16 C - 13 A vs. G - - <1 (-) 16 (-) >0.05
rs117131497 chr20:2818460 PCED1A C - 3 T vs. C 0.017 (C) - <1 (-) 72 (-) >0.05
rs1178051 chr20:2940391 PTPRA C - 13 A vs. G - - >1 (-) 23 (-) >0.05
rs1034063 chr20:3031832 MRPS26 [+2932bp] C - 13 A vs. G 0.483 (A) 0.358 (A) >1 (-) 0 (-) >0.05
rs572763 chr20:2893511 PTPRA C - 13 A vs. G 0.083 (A) 0.192 (A) >1 (-) 28 (-) >0.05
rs655076 chr20:2890204 PTPRA C - 13 A vs. G 0.083 (A) - >1 (-) 29 (-) >0.05
rs6138994 chr20:3026238 GNRH2 C - 13 T vs. G 0.175 (T) 0.325 (T) <1 (-) 31 (-) >0.05
rs6051460 chr20:2876691 PTPRA C - 13 C vs. G 0.083 (C) 0.192 (C) >1 (-) 29 (-) >0.05
rs142257292 chr20:2994125 PTPRA C - 9 A vs. G - - >1 (-) 0 (-) >0.05
rs6051459 chr20:2876471 PTPRA C - 13 A vs. G 0.058 (A) 0.192 (A) >1 (-) 29 (-) >0.05
rs62207188 chr20:2876772 PTPRA C - 13 A vs. G - - >1 (-) 29 (-) >0.05
rs1621041 chr20:2876938 PTPRA C - 13 T vs. C - - <1 (-) 29 (-) >0.05
rs556559 chr20:2868743 PTPRA C - 13 A vs. G 0.075 (A) 0.2 (A) >1 (-) 29 (-) >0.05
rs1178023 chr20:2955042 PTPRA C - 13 A vs. G - - <1 (-) 25 (-) >0.05
rs6076469 chr20:3041052 OXT [-11214bp] C - 13 T vs. C 0.45 (C) 0.2 (C) >1 (-) 0 (-) >0.05
rs12481210 chr20:2875941 PTPRA C - 13 A vs. G - - <1 (-) 31 (-) >0.05
rs670988 chr20:2858031 PTPRA C - 13 A vs. G - - >1 (-) 30 (-) >0.05
rs1178045 chr20:2917163 PTPRA C - 13 T vs. C 0.083 (T) - >1 (-) 30 (-) >0.05
rs1178049 chr20:2933613 PTPRA C - 13 A vs. T 0.083 (T) 0.192 (T) <1 (-) 31 (-) >0.05
rs6037431 chr20:2916038 PTPRA C - 13 A vs. G 0.083 (G) 0.2 (G) <1 (-) 30 (-) >0.05
rs60988802 chr20:2827284 VPS16 C - 13 T vs. G 0.083 (T) 0.208 (T) >1 (-) 12 (-) >0.05
rs648919 chr20:2869975 PTPRA C - 13 A vs. G 0.075 (G) - <1 (-) 30 (-) >0.05
rs4815562 chr20:3036110 MRPS26 [+7210bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs6115764 chr20:3024914 GNRH2 C - 13 C vs. G 0.108 (C) - >1 (-) 0 (-) >0.05
rs1741731 chr20:2930770 PTPRA C - 13 A vs. G 0.083 (G) 0.183 (G) <1 (-) 31 (-) >0.05
rs62207192 chr20:2917227 PTPRA C - 8 A vs. C 0.017 (A) - >1 (-) 16 (-) >0.05
rs73084683 chr20:2877385 PTPRA C - 13 T vs. C 0.133 (C) 0.242 (C) >1 (-) 0 (-) >0.05
rs142148313 chr20:2798063 TMEM239 C - 10 C vs. G - - <1 (-) 0 (-) >0.05
rs2740191 chr20:3059520 AVP [-3682bp] C - 12 T vs. C - - <1 (-) 22 (-) >0.05
rs508518 chr20:2873366 PTPRA C - 13 T vs. C 0.083 (T) 0.2 (T) >1 (-) 30 (-) >0.05
rs112081527 chr20:2844226 VPS16 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs117693842 chr20:2859002 PTPRA C - 4 A vs. G - 0.158 (G) <1 (-) 0 (-) >0.05
rs143176643 chr20:2973690 PTPRA C - 4 A vs. G - - >1 (-) 0 (-) >0.05
rs117889536 chr20:2867675 PTPRA C - 4 T vs. C - 0.167 (C) <1 (-) 0 (-) >0.05
rs6115763 chr20:3021137 PTPRA [+1415bp] C - 13 A vs. T 0.117 (T) 0.025 (T) >1 (-) 0 (-) >0.05
rs78922155 chr20:2965463 PTPRA C - 13 C vs. G 0.042 (G) - >1 (-) 30 (-) >0.05
rs56344714 chr20:3036481 MRPS26 [+7581bp] C - 13 T vs. C 0.45 (T) 0.25 (T) >1 (-) 0 (-) >0.05
chr20:2883134 chr20:2883134 PTPRA C - 3 A vs. T - - <1 (-) 0 (-) >0.05
rs8125955 chr20:3019957 PTPRA [+235bp] C - 13 A vs. C 0.117 (C) - >1 (-) 0 (-) >0.05
rs35505044 chr20:3024103 GNRH2 [-165bp] C - 13 A vs. G 0.117 (A) - >1 (-) 0 (-) >0.05
rs2740192 chr20:3059396 AVP [-3806bp] C - 12 T vs. C 0.158 (C) 0.092 (C) >1 (-) 20 (-) >0.05
rs73086613 chr20:2896359 PTPRA C - 13 T vs. C 0.142 (T) 0.242 (T) >1 (-) 0 (-) >0.05
rs1178047 chr20:2927363 PTPRA C - 13 T vs. G - - >1 (-) 25 (-) >0.05
rs3818605 chr20:2840773 VPS16 C - 13 T vs. C 0.142 (T) 0.208 (T) <1 (-) 0 (-) >0.05
rs1178041 chr20:2910827 PTPRA C - 13 C vs. G 0.083 (C) 0.183 (C) >1 (-) 29 (-) >0.05
rs6037461 chr20:3029688 MRPS26 [+788bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05

Association studies for this region [+]