PTPRA, chr20:2844830-3019722 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs1748066 chr20:2865776 PTPRA C - 13 A vs. G 0.492 (G) 0.117 (G) <1 (-) 19 (-) <0.05
rs13038135 chr20:2925728 PTPRA C - 13 T vs. G 0.208 (T) 0.35 (T) <1 (-) 0 (-) <0.05
rs2325975 chr20:2837763 VPS16 C - 13 A vs. T - - <1 (-) 20 (-) <0.05
rs2325976 chr20:2837772 VPS16 C - 13 T vs. C - - <1 (-) 20 (-) <0.05
rs681167 chr20:2899979 PTPRA C - 13 A vs. G 0.483 (G) 0.117 (G) <1 (-) 19 (-) <0.05
rs962440 chr20:2964851 PTPRA C - 13 A vs. G 0.492 (G) 0.167 (A) >1 (-) 15 (-) <0.05
rs148078 chr20:2861603 PTPRA C - 13 A vs. G - - >1 (-) 19 (-) <0.05
rs1016754 chr20:2889782 PTPRA C - 13 A vs. G 0.442 (A) 0.408 (G) <1 (-) 0 (-) <0.05
rs6084195 chr20:2889235 PTPRA C - 13 A vs. T 0.433 (A) 0.408 (T) <1 (-) 0 (-) <0.05
rs1161237 chr20:2863980 PTPRA C - 13 A vs. G 0.5 (A) 0.108 (A) >1 (-) 20 (-) <0.05
rs1854474 chr20:2835756 VPS16 C - 13 T vs. G - - >1 (-) 24 (-) <0.05
rs67724953 chr20:2879026 PTPRA C - 13 A vs. C 0.433 (C) 0.417 (A) >1 (-) 0 (-) <0.05
rs13040848 chr20:2899097 PTPRA C - 13 T vs. C 0.267 (T) 0.35 (T) <1 (-) 0 (-) <0.05
rs6138948 chr20:2897420 PTPRA C - 13 A vs. G 0.442 (G) 0.408 (A) >1 (-) 0 (-) <0.05
rs13036430 chr20:2907117 PTPRA C - 13 T vs. C 0.183 (T) 0.358 (T) <1 (-) 0 (-) <0.05
rs35546589 chr20:2937112 PTPRA C - 13 C vs. G 0.225 (G) 0.383 (G) >1 (-) 0 (-) <0.05
rs1854475 chr20:2835764 VPS16 C - 13 C vs. G - - <1 (-) 25 (-) <0.05
rs1161231 chr20:2891202 PTPRA C - 13 T vs. C 0.458 (T) - >1 (-) 14 (-) <0.05
rs632080 chr20:2843053 VPS16 C - 13 A vs. G 0.483 (A) 0.117 (A) >1 (-) 14 (-) <0.05
rs672386 chr20:2885193 PTPRA C - 13 T vs. C 0.492 (C) - <1 (-) 17 (-) <0.05
rs6138969 chr20:2947970 PTPRA C - 9 T vs. C - 0.083 (C) >1 (-) 8 (-) <0.05
rs527727 chr20:2907006 PTPRA C - 13 A vs. T 0.492 (A) 0.125 (A) >1 (-) 9 (-) <0.05
rs6051482 chr20:2908769 PTPRA C - 13 T vs. G 0.5 (T) 0.125 (T) >1 (-) 9 (-) <0.05
rs6132990 chr20:2898659 PTPRA C - 13 A vs. G 0.267 (A) 0.325 (A) <1 (-) 0 (-) <0.05
rs6051431 chr20:2831990 VPS16 C - 13 T vs. C - 0.4 (C) <1 (-) 25 (-) <0.05
rs6051434 chr20:2833237 VPS16 C - 13 T vs. G 0.358 (G) 0.4 (T) >1 (-) 25 (-) <0.05
rs13038702 chr20:2960933 PTPRA C - 13 A vs. G 0.217 (A) 0.392 (A) <1 (-) 0 (-) <0.05
rs150250920 chr20:2879135 PTPRA C - 10 T vs. C - - >1 (-) 0 (-) <0.05
rs6138919 chr20:2838513 VPS16 C - 13 T vs. C - - <1 (-) 0 (-) <0.05
rs570673 chr20:2871015 PTPRA C - 13 C vs. G 0.483 (G) 0.117 (G) <1 (-) 18 (-) <0.05
rs6138921 chr20:2849232 PTPRA C - 13 A vs. G 0.267 (G) 0.308 (G) >1 (-) 0 (-) <0.05
rs6037422 chr20:2832565 VPS16 C - 13 A vs. G 0.375 (A) - <1 (-) 25 (-) <0.05
rs4815550 chr20:2833458 VPS16 C - 13 A vs. G 0.358 (G) 0.4 (A) >1 (-) 25 (-) <0.05
rs34945836 chr20:2950558 PTPRA C - 13 T vs. G - - <1 (-) 0 (-) <0.05
rs149427057 chr20:2879285 PTPRA C - 10 C vs. G - - >1 (-) 0 (-) <0.05
rs77852816 chr20:2879868 PTPRA C - 10 A vs. G - 0.083 (A) <1 (-) 0 (-) <0.05
rs75592212 chr20:2879869 PTPRA C - 10 T vs. C - 0.083 (T) <1 (-) 0 (-) <0.05
rs4815551 chr20:2833577 VPS16 C - 13 T vs. C 0.358 (T) 0.417 (C) <1 (-) 20 (-) <0.05
rs4815552 chr20:2833578 VPS16 C - 13 A vs. G 0.358 (G) 0.417 (A) >1 (-) 20 (-) <0.05
rs1178043 chr20:2914075 PTPRA C - 13 T vs. C 0.492 (T) 0.075 (C) <1 (-) 18 (-) <0.05
rs6138928 chr20:2873606 PTPRA C - 13 T vs. G 0.442 (G) 0.417 (T) >1 (-) 0 (-) <0.05
rs1178040 chr20:2910645 PTPRA C - 13 A vs. G 0.492 (A) 0.075 (G) <1 (-) 18 (-) <0.05
rs6138915 chr20:2833964 VPS16 C - 13 A vs. G - - >1 (-) 25 (-) <0.05
rs585035 chr20:2872860 PTPRA C - 13 T vs. C - - >1 (-) 18 (-) <0.05
rs1178042 chr20:2911856 PTPRA C - 13 C vs. G 0.483 (G) 0.117 (C) >1 (-) 8 (-) <0.05
rs73606192 chr20:2950225 PTPRA C - 13 T vs. G - - <1 (-) 0 (-) <0.05
rs6051440 chr20:2834555 VPS16 C - 13 T vs. G - - <1 (-) 24 (-) <0.05
rs2325972 chr20:2834975 VPS16 C - 13 C vs. G 0.375 (C) 0.408 (G) <1 (-) 24 (-) <0.05
rs6051439 chr20:2834433 VPS16 C - 13 T vs. C - - <1 (-) 23 (-) <0.05
rs6084206 chr20:2918320 PTPRA C - 13 A vs. G 0.417 (G) 0.375 (A) >1 (-) 0 (-) <0.05

Association studies for this region [+]