PTPRA, chr20:2844830-3019722 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2277757 chr20:3027220 MRPS26 C - 13 A vs. G 0.233 (A) 0.325 (A) <1 (-) 0 (-) <0.05
rs117429138 chr20:2942590 PTPRA C - 9 A vs. G - 0.083 (A) <1 (-) 14 (-) <0.05
rs16988242 chr20:3026531 MRPS26 [-60bp] C - 13 A vs. C 0.225 (C) 0.417 (C) >1 (-) 0 (-) <0.05
rs1178034 chr20:2962815 PTPRA C - 13 A vs. C - - >1 (-) 23 (-) <0.05
rs1178044 chr20:2914758 PTPRA C - 13 T vs. G 0.483 (T) 0.075 (G) <1 (-) 17 (-) <0.05
rs12625897 chr20:2950742 PTPRA C - 13 T vs. C 0.225 (T) 0.367 (T) <1 (-) 0 (-) <0.05
rs11087558 chr20:2877622 PTPRA C - 13 A vs. T 0.267 (T) 0.342 (T) >1 (-) 0 (-) <0.05
rs1178030 chr20:2991268 PTPRA C - 13 T vs. C - - >1 (-) 19 (-) <0.05
rs6051449 chr20:2842685 VPS16 C - 13 A vs. C 0.417 (C) 0.433 (A) >1 (-) 0 (-) <0.05
rs57368602 chr20:2873169 PTPRA C - 10 A vs. G 0.008 (A) 0.083 (A) <1 (-) 0 (-) <0.05
rs6138975 chr20:2966161 PTPRA C - 9 T vs. C - 0.083 (C) >1 (-) 6 (-) <0.05
rs6138930 chr20:2874429 PTPRA C - 13 T vs. C 0.267 (T) 0.342 (T) <1 (-) 0 (-) <0.05
rs1178039 chr20:2979156 PTPRA C - 13 A vs. G 0.292 (G) 0.45 (G) >1 (-) 18 (-) <0.05
rs11087559 chr20:2940239 PTPRA C - 9 A vs. G - - >1 (-) 20 (-) <0.05
rs117731947 chr20:2941267 PTPRA C - 9 T vs. C - 0.083 (T) <1 (-) 20 (-) <0.05
rs6138978 chr20:2988930 PTPRA C - 13 A vs. C 0.225 (A) 0.4 (A) <1 (-) 0 (-) <0.05
rs13037313 chr20:2981750 PTPRA C - 13 A vs. G 0.217 (A) 0.392 (A) <1 (-) 0 (-) <0.05
rs2875807 chr20:2834801 VPS16 C - 13 T vs. G 0.358 (T) 0.408 (G) <1 (-) 18 (-) <0.05
rs6051456 chr20:2856288 PTPRA C - 13 A vs. T 0.408 (A) 0.417 (T) <1 (-) 0 (-) <0.05
rs6138972 chr20:2951024 PTPRA C - 9 T vs. C - - >1 (-) 21 (-) <0.05
rs117321792 chr20:2868750 PTPRA C - 10 T vs. C - 0.083 (T) <1 (-) 1 (-) <0.05
rs139922997 chr20:2924722 PTPRA C - 10 T vs. C - - >1 (-) 9 (-) <0.05
rs145253081 chr20:2924912 PTPRA C - 10 T vs. C - - >1 (-) 9 (-) <0.05
rs6133002 chr20:2991560 PTPRA C - 13 T vs. C 0.225 (T) 0.392 (T) <1 (-) 0 (-) <0.05
rs78309811 chr20:2870295 PTPRA C - 10 C vs. G 0.008 (G) 0.083 (G) >1 (-) 4 (-) <0.05
rs6138954 chr20:2915964 PTPRA C - 13 T vs. G 0.092 (T) 0.283 (T) <1 (-) 0 (-) <0.05
rs147970153 chr20:2955046 PTPRA C - 9 C vs. G - - <1 (-) 21 (-) <0.05
rs730819 chr20:2845130 VPS16 C - 13 A vs. G 0.425 (A) 0.433 (G) <1 (-) 0 (-) <0.05
rs676749 chr20:3026069 GNRH2 C - 13 A vs. T 0.5 (T) 0.075 (T) <1 (-) 14 (-) <0.05
rs6138953 chr20:2910880 PTPRA C - 10 T vs. G 0.008 (G) 0.083 (G) >1 (-) 8 (-) <0.05
rs1178055 chr20:3000903 PTPRA C - 13 A vs. G - - >1 (-) 18 (-) <0.05
rs55822505 chr20:2908570 PTPRA C - 10 T vs. C - - >1 (-) 8 (-) <0.05
rs146614229 chr20:2888297 PTPRA C - 10 T vs. C - - <1 (-) 5 (-) <0.05
rs145336914 chr20:2957777 PTPRA C - 9 C vs. G - - >1 (-) 21 (-) <0.05
rs79760362 chr20:2907044 PTPRA C - 10 T vs. C - 0.083 (T) <1 (-) 8 (-) <0.05
rs145816643 chr20:2888128 PTPRA C - 10 T vs. C - - >1 (-) 5 (-) <0.05
rs147443982 chr20:2891301 PTPRA C - 10 A vs. G - - <1 (-) 5 (-) <0.05
rs6132988 chr20:2890245 PTPRA C - 10 A vs. G - 0.067 (G) >1 (-) 5 (-) <0.05
rs117425855 chr20:2892413 PTPRA C - 10 C vs. G 0.008 (C) 0.083 (C) <1 (-) 5 (-) <0.05
rs74597783 chr20:2903864 PTPRA C - 10 A vs. G - 0.083 (G) >1 (-) 6 (-) <0.05
rs6138926 chr20:2865742 PTPRA C - 13 T vs. C 0.408 (T) 0.417 (C) <1 (-) 0 (-) <0.05
rs76841757 chr20:2903971 PTPRA C - 10 T vs. C - 0.083 (T) <1 (-) 6 (-) <0.05
rs144331209 chr20:2891992 PTPRA C - 10 A vs. C - - >1 (-) 5 (-) <0.05
rs6132989 chr20:2894780 PTPRA C - 10 A vs. G 0.008 (G) 0.067 (G) >1 (-) 5 (-) <0.05
rs79628619 chr20:2894183 PTPRA C - 10 T vs. C - 0.083 (T) <1 (-) 5 (-) <0.05
rs140551728 chr20:2884193 PTPRA C - 10 T vs. C - - <1 (-) 5 (-) <0.05
rs6138946 chr20:2894812 PTPRA C - 10 A vs. G 0.008 (G) 0.083 (G) >1 (-) 5 (-) <0.05
rs6132983 chr20:2883617 PTPRA C - 10 T vs. C - 0.108 (C) >1 (-) 5 (-) <0.05
rs117858780 chr20:2899220 PTPRA C - 10 T vs. G - 0.05 (T) <1 (-) 5 (-) <0.05
rs6138949 chr20:2897618 PTPRA C - 10 A vs. T - - <1 (-) 5 (-) <0.05

Association studies for this region [+]