PTPRA, chr20:2844830-3019722 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6138929 chr20:2873970 PTPRA C - 13 T vs. C 0.417 (T) 0.417 (C) <1 (-) 0 (-) <0.05
rs6084209 chr20:2929467 PTPRA C - 13 A vs. G - - >1 (-) 0 (-) <0.05
rs6084210 chr20:2929468 PTPRA C - 13 T vs. G - - >1 (-) 0 (-) <0.05
rs74532464 chr20:2859440 PTPRA C - 10 A vs. G - 0.083 (A) <1 (-) 0 (-) <0.05
rs74893620 chr20:2968110 PTPRA C - 9 A vs. G - 0.083 (A) <1 (-) 18 (-) <0.05
rs77380663 chr20:2847894 PTPRA C - 9 T vs. C 0.017 (C) 0.042 (C) >1 (-) 0 (-) <0.05
rs6037434 chr20:2929414 PTPRA C - 13 A vs. G - - <1 (-) 2 (-) <0.05
rs568513 chr20:3016904 PTPRA C - 13 C vs. G 0.325 (C) 0.342 (G) <1 (-) 14 (-) <0.05
rs1810800 chr20:3046432 OXT [-5834bp] C - 9 T vs. C - - >1 (-) 0 (-) <0.05
rs61386698 chr20:2856734 PTPRA C - 10 T vs. G 0.008 (G) 0.083 (G) >1 (-) 0 (-) <0.05
rs1178025 chr20:2941914 PTPRA C - 13 A vs. G 0.433 (A) 0.083 (G) <1 (-) 22 (-) <0.05
rs62206061 chr20:3034099 MRPS26 [+5199bp] C - 13 T vs. C 0.125 (C) 0.1 (C) >1 (-) 41 (-) >0.05
rs1178054 chr20:3000879 PTPRA C - 13 T vs. C - - <1 (-) 16 (-) >0.05
rs684294 chr20:3013139 PTPRA C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs507873 chr20:3009509 PTPRA C - 13 A vs. G 0.483 (G) 0.075 (A) >1 (-) 16 (-) >0.05
rs61091656 chr20:2860223 PTPRA C - 10 C vs. G 0.017 (G) 0.108 (G) >1 (-) 0 (-) >0.05
rs3827130 chr20:2959526 PTPRA C - 13 A vs. G 0.367 (A) 0.375 (G) <1 (-) 0 (-) >0.05
rs513583 chr20:2904768 PTPRA C - 11 T vs. C 0.142 (T) 0.45 (C) <1 (-) 26 (-) >0.05
rs73083219 chr20:2818348 PCED1A C - 6 T vs. C 0.008 (T) - <1 (-) 0 (-) >0.05
rs6084204 chr20:2914105 PTPRA C - 13 T vs. G 0.35 (T) 0.392 (G) <1 (-) 0 (-) >0.05
rs6133005 chr20:3008448 PTPRA C - 9 T vs. C - 0.083 (T) <1 (-) 0 (-) >0.05
rs73086668 chr20:2960876 PTPRA C - 4 T vs. C 0.05 (C) - <1 (-) 0 (-) >0.05
rs6138918 chr20:2837058 VPS16 C - 10 A vs. G 0.017 (G) 0.075 (G) >1 (-) 0 (-) >0.05
rs144565488 chr20:3068612 AVP [+3242bp] C - 10 T vs. C - - <1 (-) 42 (-) >0.05
rs566570 chr20:3017113 PTPRA C - 13 T vs. C 0.325 (C) 0.308 (T) >1 (-) 14 (-) >0.05
rs6138922 chr20:2851665 PTPRA C - 10 T vs. C 0.008 (T) 0.075 (T) <1 (-) 0 (-) >0.05
rs11699077 chr20:2829158 VPS16 C - 13 A vs. G 0.125 (G) 0.367 (G) >1 (-) 0 (-) >0.05
rs2422837 chr20:3000404 PTPRA C - 13 T vs. C - - <1 (-) 20 (-) >0.05
rs36052731 chr20:2915562 PTPRA C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs140555696 chr20:2959230 PTPRA C - 7 C vs. G - - <1 (-) 1 (-) >0.05
rs2297048 chr20:2840929 VPS16 C - 10 A vs. G 0.008 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs6138988 chr20:3020553 PTPRA [+831bp] C - 13 A vs. G 0.233 (G) 0.383 (G) >1 (-) 0 (-) >0.05
rs6138989 chr20:3021604 PTPRA [+1882bp] C - 13 A vs. C 0.233 (A) 0.383 (A) <1 (-) 0 (-) >0.05
rs146219204 chr20:2835301 VPS16 C - 10 A vs. G - - <1 (-) 0 (-) >0.05
rs6138913 chr20:2832136 VPS16 C - 10 T vs. C - - <1 (-) 0 (-) >0.05
rs6139004 chr20:3052566 OXT C - 8 A vs. G - - <1 (-) 36 (-) >0.05
rs631439 chr20:2999082 PTPRA C - 13 A vs. C - - <1 (-) 0 (-) >0.05
rs490535 chr20:3001343 PTPRA C - 13 T vs. C 0.283 (T) 0.375 (T) <1 (-) 16 (-) >0.05
rs6132980 chr20:2833977 VPS16 C - 10 T vs. G - - <1 (-) 0 (-) >0.05
rs60040561 chr20:2975069 PTPRA C - 9 T vs. G - 0.1 (T) <1 (-) 15 (-) >0.05
rs6138914 chr20:2833634 VPS16 C - 10 T vs. G 0.017 (T) 0.067 (T) <1 (-) 0 (-) >0.05
rs117259301 chr20:2844429 VPS16 C - 10 A vs. G 0.008 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs15659 chr20:3019546 PTPRA C - 13 T vs. C 0.233 (T) 0.383 (T) <1 (-) 0 (-) >0.05
rs2274671 chr20:2844911 VPS16 C - 10 T vs. C - 0.1 (T) <1 (-) 6 (-) >0.05
rs490705 chr20:2998845 PTPRA C - 13 A vs. G 0.475 (A) 0.183 (G) <1 (-) 22 (-) >0.05
rs2325974 chr20:2837592 VPS16 C - 13 T vs. C 0.375 (C) 0.325 (T) >1 (-) 19 (-) >0.05
rs6132975 chr20:2815760 PCED1A [-200bp] C - 13 C vs. G 0.35 (C) 0.442 (G) <1 (-) 0 (-) >0.05
rs1329269 chr20:2810098 PCED1A [-5862bp] C - 13 T vs. C 0.4 (T) 0.333 (C) <1 (-) 0 (-) >0.05
rs61396321 chr20:2997115 PTPRA C - 9 T vs. C 0.017 (T) 0.208 (T) <1 (-) 0 (-) >0.05
rs6051538 chr20:3009529 PTPRA C - 4 A vs. G - - <1 (-) 0 (-) >0.05

Association studies for this region [+]