PTPRA, chr20:2844830-3019722 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs12625893 chr20:3033259 MRPS26 [+4359bp] C - 13 A vs. G 0.225 (A) 0.342 (G) <1 (-) 0 (-) >0.05
rs911143 chr20:2992446 PTPRA C - 13 T vs. G 0.483 (T) 0.183 (G) <1 (-) 23 (-) >0.05
rs6132978 chr20:2826321 VPS16 C - 10 A vs. G 0.017 (G) 0.075 (G) >1 (-) 0 (-) >0.05
rs6132977 chr20:2825972 VPS16 C - 10 A vs. G 0.017 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs638862 chr20:3009918 PTPRA C - 13 T vs. C 0.467 (C) 0.183 (T) >1 (-) 16 (-) >0.05
rs6138908 chr20:2829967 VPS16 C - 9 A vs. G 0.008 (A) - <1 (-) 0 (-) >0.05
rs6133008 chr20:3027978 MRPS26 C - 6 T vs. C - - >1 (-) 34 (-) >0.05
rs6132976 chr20:2825051 VPS16 C - 10 A vs. G 0.017 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs116897578 chr20:3028071 MRPS26 C - 6 A vs. G - 0.05 (A) <1 (-) 35 (-) >0.05
rs637555 chr20:3009669 PTPRA C - 13 T vs. C 0.475 (C) 0.183 (T) >1 (-) 16 (-) >0.05
rs1810799 chr20:3046403 OXT [-5863bp] C - 9 T vs. C - 0.1 (C) >1 (-) 0 (-) >0.05
rs6138963 chr20:2934398 PTPRA C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs6037474 chr20:3046910 OXT [-5356bp] C - 9 T vs. G - - <1 (-) 0 (-) >0.05
rs73581771 chr20:2943406 PTPRA C - 11 A vs. C 0.017 (A) 0.1 (A) <1 (-) 10 (-) >0.05
rs12625619 chr20:2796007 TMEM239 C - 13 A vs. G 0.092 (A) 0.142 (A) <1 (-) 0 (-) >0.05
rs3818226 chr20:2945288 PTPRA C - 13 T vs. G 0.392 (T) 0.375 (G) <1 (-) 0 (-) >0.05
rs6138981 chr20:3006077 PTPRA C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs6138907 chr20:2829217 VPS16 C - 10 A vs. G 0.017 (A) 0.075 (A) <1 (-) 0 (-) >0.05
rs1178016 chr20:2996497 PTPRA C - 13 T vs. C 0.483 (T) 0.183 (C) <1 (-) 23 (-) >0.05
rs6132981 chr20:2843801 VPS16 C - 10 A vs. G 0.008 (A) 0.075 (A) <1 (-) 11 (-) >0.05
rs12481535 chr20:2981354 PTPRA C - 13 A vs. T 0.392 (A) 0.367 (T) <1 (-) 0 (-) >0.05
rs1963274 chr20:2984960 PTPRA C - 13 A vs. G 0.375 (A) 0.4 (G) <1 (-) 0 (-) >0.05
rs12480069 chr20:2981388 PTPRA C - 13 A vs. G 0.392 (A) 0.367 (G) <1 (-) 0 (-) >0.05
rs78221943 chr20:2979053 PTPRA C - 9 A vs. G - 0.1 (G) >1 (-) 15 (-) >0.05
rs6051577 chr20:3068580 AVP [+3210bp] C - 12 A vs. C - - >1 (-) 0 (-) >0.05
rs6138950 chr20:2897760 PTPRA C - 11 A vs. G - 0.108 (A) <1 (-) 25 (-) >0.05
rs67036767 chr20:2940278 PTPRA C - 12 C vs. G 0.067 (C) 0.033 (C) <1 (-) 0 (-) >0.05
rs568235 chr20:3005413 PTPRA C - 13 A vs. G 0.483 (A) 0.183 (G) <1 (-) 16 (-) >0.05
rs6138986 chr20:3018280 PTPRA C - 8 T vs. C - 0.075 (T) <1 (-) 0 (-) >0.05
rs513890 chr20:3003894 PTPRA C - 13 A vs. G - - <1 (-) 17 (-) >0.05
rs561059 chr20:3011175 PTPRA C - 13 A vs. G 0.492 (G) 0.183 (A) >1 (-) 17 (-) >0.05
rs6138987 chr20:3018782 PTPRA C - 8 A vs. G 0.008 (A) 0.033 (A) <1 (-) 0 (-) >0.05
rs80123361 chr20:3009170 PTPRA C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs633293 chr20:3002432 PTPRA C - 13 T vs. C 0.483 (T) 0.183 (C) <1 (-) 16 (-) >0.05
rs1178015 chr20:2996423 PTPRA C - 13 A vs. T 0.483 (A) 0.175 (T) <1 (-) 23 (-) >0.05
rs6133000 chr20:2984959 PTPRA C - 9 T vs. C - 0.1 (T) <1 (-) 14 (-) >0.05
rs571058 chr20:3007228 PTPRA C - 13 A vs. G 0.475 (A) 0.183 (G) <1 (-) 16 (-) >0.05
rs146526220 chr20:2984854 PTPRA C - 9 A vs. G - - <1 (-) 14 (-) >0.05
rs599538 chr20:3007492 PTPRA C - 13 T vs. C 0.492 (C) 0.183 (T) >1 (-) 16 (-) >0.05
rs117946273 chr20:2930337 PTPRA C - 8 T vs. C 0.008 (C) - <1 (-) 0 (-) >0.05
rs6107224 chr20:3034916 MRPS26 [+6016bp] C - 13 T vs. C - - <1 (-) 5 (-) >0.05
rs6051457 chr20:2868716 PTPRA C - 12 A vs. G - 0.083 (A) <1 (-) 20 (-) >0.05
rs6051518 chr20:2977537 PTPRA C - 13 A vs. G 0.383 (A) 0.367 (G) <1 (-) 0 (-) >0.05
rs114785756 chr20:2825807 VPS16 C - 8 C vs. G 0.017 (C) 0.075 (C) <1 (-) 0 (-) >0.05
rs6133003 chr20:2994572 PTPRA C - 9 A vs. G - 0.067 (G) >1 (-) 0 (-) >0.05
rs6076453 chr20:2973199 PTPRA C - 13 T vs. C 0.383 (T) 0.367 (C) <1 (-) 0 (-) >0.05
rs6132999 chr20:2984955 PTPRA C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs6138962 chr20:2934158 PTPRA C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs6138979 chr20:2990333 PTPRA C - 9 A vs. G - 0.083 (A) <1 (-) 0 (-) >0.05
rs58156936 chr20:2984813 PTPRA C - 9 A vs. C - - >1 (-) 0 (-) >0.05

Association studies for this region [+]