PTPRA, chr20:2844830-3019722 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6138902 chr20:2813527 PCED1A [-2433bp] C - 8 A vs. C - 0.075 (A) <1 (-) 0 (-) >0.05
rs6133010 chr20:3050301 OXT [-1965bp] C - 6 A vs. G 0.058 (G) 0.108 (G) <1 (-) 0 (-) >0.05
rs147805495 chr20:2970000 PTPRA C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs2282018 chr20:3064949 AVP C - 12 T vs. C 0.392 (C) 0.4 (C) <1 (-) 0 (-) >0.05
rs150407681 chr20:2831976 VPS16 C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs67597752 chr20:3013473 PTPRA C - 12 A vs. T 0.208 (T) 0.108 (T) >1 (-) 5 (-) >0.05
rs113574767 chr20:2985949 PTPRA C - 5 A vs. C 0.033 (A) - >1 (-) 0 (-) >0.05
rs2770378 chr20:3053514 OXT [+351bp] C - 12 A vs. G 0.358 (A) 0.283 (A) <1 (-) 0 (-) >0.05
rs6084250 chr20:3043540 OXT [-8726bp] C - 9 A vs. C 0.2 (C) 0.075 (C) >1 (-) 0 (-) >0.05
rs141134447 chr20:3056892 OXT [+3729bp] C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs10211786 chr20:2808664 PCED1A [-7296bp] C - 13 A vs. C 0.117 (A) - <1 (-) 0 (-) >0.05
rs2740210 chr20:3053255 OXT [+92bp] C - 12 A vs. C 0.325 (A) 0.225 (A) <1 (-) 0 (-) >0.05
rs115016892 chr20:2998368 PTPRA C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs6051420 chr20:2808662 PCED1A [-7298bp] C - 13 T vs. C 0.117 (T) - <1 (-) 0 (-) >0.05
rs117181010 chr20:2938604 PTPRA C - 13 T vs. C 0.025 (C) - >1 (-) 0 (-) >0.05
rs140160115 chr20:3010623 PTPRA C - 3 C vs. G - - <1 (-) 67 (-) >0.05
rs6051423 chr20:2815231 PCED1A [-729bp] C - 13 A vs. G 0.117 (A) 0.217 (A) <1 (-) 0 (-) >0.05
rs6084246 chr20:3039819 MRPS26 [+10919bp] C - 13 A vs. G 0.25 (A) 0.117 (A) >1 (-) 0 (-) >0.05
rs2740209 chr20:3053496 OXT [+333bp] C - 12 C vs. G 0.292 (C) 0.225 (C) <1 (-) 0 (-) >0.05
rs6138901 chr20:2809555 PCED1A [-6405bp] C - 7 T vs. C - 0.083 (C) >1 (-) 7 (-) >0.05
rs3787479 chr20:3010965 PTPRA C - 13 A vs. G 0.1 (A) 0.292 (A) <1 (-) 12 (-) >0.05
rs36103850 chr20:2986964 PTPRA C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs6051526 chr20:2991552 PTPRA C - 3 T vs. C - - >1 (-) 0 (-) >0.05
rs117899274 chr20:3011652 PTPRA C - 3 A vs. G - 0.008 (A) <1 (-) 68 (-) >0.05
rs71328096 chr20:3038261 MRPS26 [+9361bp] C - 13 A vs. C 0.217 (C) - <1 (-) 0 (-) >0.05
rs6037454 chr20:2979215 PTPRA C - 3 T vs. C - - >1 (-) 0 (-) >0.05
rs115116337 chr20:2986918 PTPRA C - 3 A vs. G - - <1 (-) 0 (-) >0.05
rs4813618 chr20:2809123 PCED1A [-6837bp] C - 13 C vs. G 0.117 (C) 0.208 (C) <1 (-) 0 (-) >0.05
rs2875830 chr20:3054033 OXT [+870bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs4813626 chr20:3051291 OXT [-975bp] C - 12 A vs. G 0.483 (G) 0.342 (G) <1 (-) 13 (-) >0.05
rs117398581 chr20:3012819 PTPRA C - 3 T vs. C - 0.025 (T) <1 (-) 69 (-) >0.05
rs145060338 chr20:3050127 OXT [-2139bp] C - 5 T vs. C - - <1 (-) 29 (-) >0.05
rs6051510 chr20:2962104 PTPRA C - 13 A vs. T 0.1 (T) 0.283 (T) >1 (-) 18 (-) >0.05
rs6051421 chr20:2812820 PCED1A [-3140bp] C - 13 A vs. G 0.117 (G) 0.208 (G) >1 (-) 0 (-) >0.05
rs117718369 chr20:2923802 PTPRA C - 13 A vs. G 0.025 (A) - <1 (-) 0 (-) >0.05
rs146103306 chr20:3015298 PTPRA C - 3 A vs. G - - >1 (-) 70 (-) >0.05
rs6132973 chr20:2807882 TMEM239 [+6952bp] C - 6 A vs. G - 0.058 (A) <1 (-) 23 (-) >0.05
rs141761763 chr20:2970402 PTPRA C - 3 A vs. G - - <1 (-) 0 (-) >0.05
rs6138961 chr20:2931738 PTPRA C - 10 C vs. G 0.017 (C) 0.083 (C) <1 (-) 28 (-) >0.05
rs2770379 chr20:3054507 OXT [+1344bp] C - 12 A vs. T 0.3 (T) 0.217 (T) >1 (-) 0 (-) >0.05
rs2740206 chr20:3054516 OXT [+1353bp] C - 12 T vs. C 0.3 (T) 0.217 (T) <1 (-) 0 (-) >0.05
rs2004688 chr20:3046505 OXT [-5761bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs6107225 chr20:3038318 MRPS26 [+9418bp] C - 13 A vs. C 0.208 (A) - >1 (-) 0 (-) >0.05
rs2297047 chr20:2821601 PCED1A C - 13 T vs. C 0.075 (T) 0.208 (T) <1 (-) 0 (-) >0.05
rs1887854 chr20:3063161 AVP [-41bp] C - 12 T vs. C 0.175 (T) 0.1 (T) >1 (-) 26 (-) >0.05
rs913659 chr20:2821144 PCED1A C - 13 T vs. C 0.117 (T) 0.192 (T) <1 (-) 0 (-) >0.05
rs112012071 chr20:2909700 PTPRA C - 8 T vs. C - - <1 (-) 0 (-) >0.05
rs6037465 chr20:3033657 MRPS26 [+4757bp] C - 9 A vs. C - - >1 (-) 0 (-) >0.05
rs79119754 chr20:2814096 PCED1A [-1864bp] C - 11 C vs. G 0.025 (G) - >1 (-) 7 (-) >0.05
rs3746689 chr20:2817484 PCED1A C - 13 T vs. C 0.108 (T) 0.208 (T) <1 (-) 0 (-) >0.05

Association studies for this region [+]