PTPRA, chr20:2844830-3019722 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3746690 chr20:2820797 PCED1A C - 13 A vs. G - 0.208 (A) <1 (-) 0 (-) >0.05
rs8121858 chr20:2834056 VPS16 C - 4 A vs. C - - <1 (-) 36 (-) >0.05
rs6037457 chr20:3011069 PTPRA C - 4 T vs. C - - >1 (-) 21 (-) >0.05
rs1100 chr20:3028711 MRPS26 C - 8 A vs. G 0.075 (A) 0.325 (A) <1 (-) 0 (-) >0.05
rs60132298 chr20:2929551 PTPRA C - 3 T vs. C - - >1 (-) 0 (-) >0.05
rs3729965 chr20:3065547 AVP [+177bp] C - 10 A vs. G 0.267 (A) 0.092 (A) >1 (-) 0 (-) >0.05
rs6037456 chr20:3010489 PTPRA C - 4 A vs. T - - >1 (-) 21 (-) >0.05
rs2297046 chr20:2821400 PCED1A C - 12 T vs. C 0.075 (T) - <1 (-) 0 (-) >0.05
rs147613749 chr20:2973392 PTPRA C - 7 T vs. C - - >1 (-) 0 (-) >0.05
rs144349842 chr20:2976725 PTPRA C - 7 C vs. G - - >1 (-) 0 (-) >0.05
rs80081239 chr20:2848083 PTPRA C - 13 A vs. G 0.025 (A) - <1 (-) 0 (-) >0.05
rs500809 chr20:3013136 PTPRA C - 13 A vs. G - - <1 (-) 11 (-) >0.05
rs118176961 chr20:2883324 PTPRA C - 9 A vs. G 0.008 (A) - <1 (-) 0 (-) >0.05
rs73575843 chr20:2904101 PTPRA C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs73581740 chr20:2914988 PTPRA C - 3 A vs. G - - <1 (-) 0 (-) >0.05
rs73890841 chr20:3058899 AVP [-4303bp] C - 10 A vs. G 0.15 (G) 0.217 (G) >1 (-) 0 (-) >0.05
rs4815558 chr20:3035406 MRPS26 [+6506bp] C - 13 A vs. C 0.133 (A) 0.392 (A) <1 (-) 0 (-) >0.05
rs6138900 chr20:2799040 TMEM239 C - 3 C vs. G 0.067 (C) 0.058 (C) <1 (-) 44 (-) >0.05
rs6076463 chr20:3012815 PTPRA C - 13 T vs. C 0.292 (T) 0.142 (T) <1 (-) 0 (-) >0.05
rs66809880 chr20:2801040 TMEM239 [+110bp] C - 13 A vs. C 0.267 (A) 0.392 (A) <1 (-) 19 (-) >0.05
rs6037419 chr20:2800208 TMEM239 C - 3 A vs. G 0.05 (A) 0.1 (A) <1 (-) 46 (-) >0.05
rs3761248 chr20:3050393 OXT [-1873bp] C - 12 T vs. C 0.225 (C) 0.208 (C) >1 (-) 0 (-) >0.05
rs6037424 chr20:2835406 VPS16 C - 9 T vs. C - - >1 (-) 0 (-) >0.05
rs61138008 chr20:3067254 AVP [+1884bp] C - 4 T vs. C - - <1 (-) 0 (-) >0.05
rs7360412 chr20:2800801 TMEM239 C - 3 A vs. C 0.075 (C) 0.108 (C) >1 (-) 45 (-) >0.05
rs3761246 chr20:3050335 OXT [-1931bp] C - 12 A vs. C 0.208 (A) 0.208 (A) <1 (-) 0 (-) >0.05
rs6084251 chr20:3043700 OXT [-8566bp] C - 10 A vs. G - - >1 (-) 0 (-) >0.05
rs139659183 chr20:2932443 PTPRA C - 4 T vs. C - - <1 (-) 0 (-) >0.05
rs73084684 chr20:2878486 PTPRA C - 13 C vs. G 0.167 (G) 0.233 (G) >1 (-) 0 (-) >0.05
rs6076448 chr20:2927796 PTPRA C - 13 T vs. G 0.108 (T) 0.283 (T) <1 (-) 20 (-) >0.05
rs115369950 chr20:2824146 VPS16 C - 3 A vs. C - - >1 (-) 0 (-) >0.05
rs2296236 chr20:3020090 PTPRA [+368bp] C - 13 T vs. C 0.175 (T) 0.333 (T) <1 (-) 27 (-) >0.05
rs1178029 chr20:2990557 PTPRA C - 13 T vs. C 0.075 (T) 0.258 (T) <1 (-) 28 (-) >0.05
rs13043523 chr20:2801577 TMEM239 [+647bp] C - 3 A vs. G 0.033 (A) - <1 (-) 41 (-) >0.05
rs150105077 chr20:2926687 PTPRA C - 3 T vs. C - - >1 (-) 0 (-) >0.05
rs75655999 chr20:2911954 PTPRA C - 3 T vs. C 0.008 (T) - <1 (-) 0 (-) >0.05
rs114962805 chr20:2829689 VPS16 C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs118149090 chr20:2910332 PTPRA C - 3 A vs. G - 0.025 (A) <1 (-) 0 (-) >0.05
rs80113680 chr20:2961645 PTPRA C - 4 T vs. C - 0.108 (C) <1 (-) 0 (-) >0.05
rs74639016 chr20:2961873 PTPRA C - 4 T vs. C - 0.117 (T) >1 (-) 0 (-) >0.05
rs143903678 chr20:2832169 VPS16 C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs6084238 chr20:3021772 PTPRA [+2050bp] C - 13 T vs. C - - >1 (-) 20 (-) >0.05
rs555414 chr20:2846427 VPS16 C - 13 T vs. C 0.092 (T) 0.283 (T) <1 (-) 0 (-) >0.05
rs6084184 chr20:2812772 PCED1A [-3188bp] C - 13 A vs. G 0.217 (G) 0.3 (G) >1 (-) 0 (-) >0.05
rs6037479 chr20:3060738 AVP [-2464bp] C - 10 A vs. G 0.142 (A) 0.133 (A) <1 (-) 0 (-) >0.05
rs6115734 chr20:2929408 PTPRA C - 13 T vs. C - - >1 (-) 21 (-) >0.05
rs6084237 chr20:3021766 PTPRA [+2044bp] C - 13 A vs. T - - <1 (-) 20 (-) >0.05
rs2770381 chr20:3061986 AVP [-1216bp] C - 12 A vs. C 0.325 (C) 0.342 (C) >1 (-) 0 (-) >0.05
rs149171329 chr20:3000683 PTPRA C - 13 T vs. G - - >1 (-) 21 (-) >0.05
rs6051573 chr20:3060786 AVP [-2416bp] C - 10 A vs. G - 0.183 (G) >1 (-) 0 (-) >0.05

Association studies for this region [+]