SCP2, chr1:53392901-53517375 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2906770 chr1:53471432 SCP2 All: C 108,990 15 C vs. A - - 1.13 (1.07-1.20) 40 (0-68) 5.39e-05
Meta_image?name=rs2906770

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs60809666 chr1:53428562 SCP2 C - 13 A vs. T 0.025 (T) 0.225 (T) <1 (-) 0 (-) >0.05
rs75448253 chr1:53512354 SCP2 C - 13 T vs. G 0.033 (G) 0.267 (G) <1 (-) 0 (-) >0.05
rs75948848 chr1:53500778 SCP2 C - 13 A vs. G - - <1 (-) 15 (-) >0.05
rs80077192 chr1:53500537 SCP2 C - 13 A vs. G - - >1 (-) 15 (-) >0.05
rs2275758 chr1:53377125 ECHDC2 C - 13 A vs. G 0.025 (A) 0.217 (A) >1 (-) 0 (-) >0.05
rs12567821 chr1:53512914 SCP2 C - 13 A vs. G 0.025 (A) 0.267 (A) >1 (-) 0 (-) >0.05
rs2170301 chr1:53505103 SCP2 C - 13 A vs. G 0.092 (A) 0.392 (A) >1 (-) 0 (-) >0.05
rs72903185 chr1:53502905 SCP2 C - 13 A vs. T 0.033 (A) 0.1 (A) >1 (-) 16 (-) >0.05
rs17107708 chr1:53502884 SCP2 C - 13 C vs. G 0.033 (G) 0.125 (G) <1 (-) 17 (-) >0.05
rs13373890 chr1:53417332 SCP2 C - 13 A vs. G 0.025 (A) 0.167 (A) >1 (-) 0 (-) >0.05
rs114120709 chr1:53421912 SCP2 C - 13 T vs. G 0.008 (T) 0.208 (T) >1 (-) 0 (-) >0.05
rs57004602 chr1:53466595 SCP2 C - 13 A vs. C 0.067 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs6673465 chr1:53499822 SCP2 C - 13 A vs. G 0.025 (A) 0.075 (A) >1 (-) 15 (-) >0.05
rs142282007 chr1:53487884 SCP2 C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs76928998 chr1:53461618 SCP2 C - 4 A vs. G - - <1 (-) 20 (-) >0.05
rs11206085 chr1:53527619 PODN [-235bp] C - 13 A vs. T - - <1 (-) 0 (-) >0.05
rs6666902 chr1:53409444 SCP2 C - 12 T vs. C - - >1 (-) 16 (-) >0.05
rs77523182 chr1:53563442 SLC1A7 C - 13 C vs. G - - >1 (-) 0 (-) >0.05
rs3820268 chr1:53380515 ECHDC2 C - 13 C vs. G 0.025 (G) 0.208 (G) <1 (-) 0 (-) >0.05
rs12568646 chr1:53448431 SCP2 C - 13 A vs. G 0.067 (G) 0.35 (G) <1 (-) 0 (-) >0.05
rs115816054 chr1:53464168 SCP2 C - 13 T vs. C 0.042 (T) 0.25 (T) >1 (-) 0 (-) >0.05
rs3820200 chr1:53517283 SCP2 C - 13 C vs. G 0.033 (A) 0.292 (G) <1 (-) 0 (-) >0.05
rs115055483 chr1:53464056 SCP2 C - 13 T vs. C 0.033 (T) 0.267 (T) >1 (-) 0 (-) >0.05
rs6685597 chr1:53446819 SCP2 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs116927757 chr1:53416082 SCP2 C - 13 A vs. G - 0.158 (G) <1 (-) 0 (-) >0.05
rs114329901 chr1:53395909 SCP2 C - 12 A vs. G - - <1 (-) 17 (-) >0.05
rs7555050 chr1:53489132 SCP2 C - 13 A vs. G 0.033 (A) 0.083 (A) >1 (-) 14 (-) >0.05
rs56911955 chr1:53445771 SCP2 C - 13 A vs. G 0.025 (G) 0.192 (G) <1 (-) 0 (-) >0.05
rs17107544 chr1:53464919 SCP2 C - 13 A vs. C 0.067 (A) 0.35 (A) >1 (-) 0 (-) >0.05
rs77330574 chr1:53493820 SCP2 C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs6690936 chr1:53488092 SCP2 C - 13 T vs. G 0.067 (G) 0.358 (G) <1 (-) 0 (-) >0.05
rs74482100 chr1:53383320 ECHDC2 C - 13 T vs. C 0.025 (C) 0.183 (C) <1 (-) 0 (-) >0.05
rs6588455 chr1:53492657 SCP2 C - 13 A vs. C 0.067 (C) - <1 (-) 0 (-) >0.05
rs60576668 chr1:53517349 SCP2 C - 13 A vs. G 0.067 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs77562670 chr1:53506133 SCP2 C - 12 A vs. C - - >1 (-) 0 (-) >0.05
rs6675161 chr1:53487471 SCP2 C - 13 T vs. C - 0.075 (T) >1 (-) 11 (-) >0.05
rs17107648 chr1:53494781 SCP2 C - 13 T vs. C 0.067 (T) 0.35 (T) >1 (-) 0 (-) >0.05
rs3766762 chr1:53514516 SCP2 C - 13 T vs. C 0.033 (C) 0.283 (C) <1 (-) 0 (-) >0.05
rs57333398 chr1:53469303 SCP2 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs77368772 chr1:53491039 SCP2 C - 13 A vs. G 0.067 (G) 0.367 (G) <1 (-) 0 (-) >0.05
rs60130096 chr1:53503202 SCP2 C - 12 C vs. G - - >1 (-) 0 (-) >0.05
rs6658468 chr1:53474202 SCP2 C - 13 A vs. G - - <1 (-) 11 (-) >0.05
rs6588448 chr1:53485839 SCP2 C - 13 A vs. G 0.092 (G) - <1 (-) 2 (-) >0.05
rs17107546 chr1:53467173 SCP2 C - 13 T vs. C 0.067 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs3766764 chr1:53515305 SCP2 C - 13 A vs. G 0.058 (A) 0.317 (A) >1 (-) 0 (-) >0.05
rs9660829 chr1:53475542 SCP2 C - 13 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs17107702 chr1:53502877 SCP2 C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs148705313 chr1:53502810 SCP2 C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs115828273 chr1:53375516 ECHDC2 C - 12 A vs. G - - >1 (-) 16 (-) >0.05
rs6675803 chr1:53488129 SCP2 C - 13 C vs. G 0.067 (G) 0.342 (G) <1 (-) 0 (-) >0.05

Association studies for this region [+]