SCP2, chr1:53392901-53517375 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2906770 chr1:53471432 SCP2 All: C 108,990 15 C vs. A - - 1.13 (1.07-1.20) 40 (0-68) 5.39e-05
Meta_image?name=rs2906770

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6697308 chr1:53534687 PODN C - 13 C vs. G 0.033 (G) 0.25 (G) <1 (-) 0 (-) >0.05
rs58924052 chr1:53565054 SLC1A7 C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs2275453 chr1:53535876 PODN C - 13 T vs. C - 0.25 (C) <1 (-) 0 (-) >0.05
rs76971537 chr1:53406768 SCP2 C - 13 T vs. C 0.025 (C) 0.233 (C) <1 (-) 0 (-) >0.05
rs60813156 chr1:53402536 SCP2 C - 13 A vs. C 0.025 (C) 0.217 (C) <1 (-) 0 (-) >0.05
rs12096165 chr1:53518049 SCP2 [+674bp] C - 13 T vs. G 0.025 (G) - <1 (-) 0 (-) >0.05
rs17107767 chr1:53517997 SCP2 [+622bp] C - 13 T vs. C 0.017 (C) - <1 (-) 0 (-) >0.05
rs6697076 chr1:53459362 SCP2 C - 13 T vs. C 0.033 (C) 0.083 (C) <1 (-) 14 (-) >0.05
rs6421492 chr1:53511341 SCP2 C - 13 A vs. T 0.058 (A) 0.1 (A) >1 (-) 1 (-) >0.05
rs11577650 chr1:53519436 SCP2 [+2061bp] C - 13 A vs. G 0.025 (G) - <1 (-) 0 (-) >0.05
rs12070497 chr1:53518235 SCP2 [+860bp] C - 13 T vs. C 0.025 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs7534827 chr1:53515596 SCP2 C - 13 A vs. G 0.025 (G) 0.05 (G) <1 (-) 0 (-) >0.05
rs4926946 chr1:53515101 SCP2 C - 13 A vs. C 0.025 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs74728094 chr1:53406738 SCP2 C - 13 T vs. C 0.025 (T) 0.225 (T) >1 (-) 0 (-) >0.05
rs17107765 chr1:53517698 SCP2 [+323bp] C - 13 A vs. G 0.025 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs4282747 chr1:53517654 SCP2 [+279bp] C - 13 A vs. G 0.025 (G) - <1 (-) 0 (-) >0.05
rs6677541 chr1:53514628 SCP2 C - 13 A vs. G 0.025 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs115802509 chr1:53405698 SCP2 C - 13 T vs. C 0.025 (T) 0.217 (T) >1 (-) 0 (-) >0.05
rs7541215 chr1:53457470 SCP2 C - 13 A vs. G 0.025 (G) - >1 (-) 0 (-) >0.05
rs60683413 chr1:53457368 SCP2 C - 13 C vs. G 0.025 (C) 0.033 (C) <1 (-) 0 (-) >0.05
rs77980215 chr1:53528502 PODN C - 13 T vs. C 0.025 (T) 0.308 (T) >1 (-) 0 (-) >0.05
rs7530287 chr1:53458199 SCP2 C - 13 C vs. G 0.092 (G) - <1 (-) 11 (-) >0.05
rs12566810 chr1:53533513 PODN C - 13 A vs. C - 0.25 (A) >1 (-) 0 (-) >0.05
rs11131276 chr1:53471422 SCP2 C - 13 T vs. C - - >1 (-) 5 (-) >0.05
rs72905172 chr1:53533756 PODN C - 13 T vs. C 0.033 (C) 0.25 (C) <1 (-) 0 (-) >0.05
rs6695341 chr1:53486561 SCP2 C - 13 A vs. G 0.067 (A) 0.375 (A) >1 (-) 0 (-) >0.05
rs72905174 chr1:53533862 PODN C - 13 A vs. G 0.033 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs4341318 chr1:53450720 SCP2 C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs74637396 chr1:53486558 SCP2 C - 13 T vs. C 0.067 (T) 0.375 (T) >1 (-) 0 (-) >0.05
rs74082414 chr1:53533768 PODN C - 13 T vs. C 0.033 (C) 0.25 (C) <1 (-) 0 (-) >0.05
rs8871 chr1:53516999 SCP2 C - 13 A vs. C 0.067 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs17107837 chr1:53537699 PODN C - 13 A vs. G 0.033 (G) 0.108 (G) >1 (-) 1 (-) >0.05
rs13376501 chr1:53512285 SCP2 C - 13 T vs. C 0.025 (C) - <1 (-) 0 (-) >0.05
rs10994743 chr1:53471478 SCP2 C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs6588454 chr1:53492437 SCP2 C - 13 A vs. T - 0.058 (T) <1 (-) 11 (-) >0.05
rs17107814 chr1:53534248 PODN C - 13 A vs. G 0.033 (G) 0.25 (G) <1 (-) 0 (-) >0.05
rs139311818 chr1:53473680 SCP2 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs12075986 chr1:53497596 SCP2 C - 13 T vs. G 0.025 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs60891908 chr1:53533973 PODN C - 13 A vs. C 0.033 (C) 0.25 (C) <1 (-) 0 (-) >0.05
rs56657381 chr1:53534143 PODN C - 13 C vs. G 0.033 (G) 0.25 (G) <1 (-) 0 (-) >0.05
rs11206054 chr1:53436385 SCP2 C - 6 C vs. G - - >1 (-) 13 (-) >0.05
rs143144101 chr1:53517930 SCP2 [+555bp] C - 11 A vs. C - - >1 (-) 0 (-) >0.05
rs11206049 chr1:53418252 SCP2 C - 9 T vs. G - - >1 (-) 0 (-) >0.05
rs146356871 chr1:53419189 SCP2 C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs148951197 chr1:53416703 SCP2 C - 9 A vs. G - - <1 (-) 0 (-) >0.05
rs12566293 chr1:53501596 SCP2 C - 13 C vs. G - - >1 (-) 0 (-) >0.05
rs149105987 chr1:53409722 SCP2 C - 9 A vs. G - - >1 (-) 0 (-) >0.05
rs7544053 chr1:53460369 SCP2 C - 13 A vs. G 0.067 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs4926949 chr1:53534257 PODN C - 13 T vs. G 0.042 (G) 0.033 (G) >1 (-) 0 (-) >0.05
rs17107756 chr1:53516017 SCP2 C - 13 C vs. G 0.025 (C) 0.033 (C) >1 (-) 0 (-) >0.05

Association studies for this region [+]