SCP2, chr1:53392901-53517375 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2906770 chr1:53471432 SCP2 All: C 108,990 15 C vs. A - - 1.13 (1.07-1.20) 40 (0-68) 5.39e-05
Meta_image?name=rs2906770

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs1580356 chr1:53524715 PODN [-3139bp] C - 13 A vs. G 0.033 (A) 0.075 (A) >1 (-) 0 (-) >0.05
rs145250169 chr1:53526136 PODN [-1718bp] C - 11 C vs. G - - <1 (-) 33 (-) >0.05
rs146681934 chr1:53409019 SCP2 C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs7552336 chr1:53510831 SCP2 C - 13 A vs. C 0.025 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs149815560 chr1:53444907 SCP2 C - 7 A vs. G - - <1 (-) 18 (-) >0.05
rs1531699 chr1:53535175 PODN C - 13 T vs. C 0.042 (C) 0.25 (C) <1 (-) 0 (-) >0.05
rs12088481 chr1:53511229 SCP2 C - 13 A vs. G 0.025 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs11808636 chr1:53501433 SCP2 C - 13 T vs. C 0.025 (C) - <1 (-) 0 (-) >0.05
rs11808284 chr1:53504411 SCP2 C - 13 A vs. G 0.025 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs3753756 chr1:53380922 ECHDC2 C - 10 T vs. G - 0.292 (G) >1 (-) 38 (-) >0.05
rs11806961 chr1:53501578 SCP2 C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs11590871 chr1:53510671 SCP2 C - 13 A vs. G 0.025 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs12568971 chr1:53537833 PODN C - 13 T vs. G 0.067 (T) 0.358 (T) >1 (-) 19 (-) >0.05
rs17107774 chr1:53520736 SCP2 [+3361bp] C - 13 T vs. C 0.067 (T) 0.35 (T) <1 (-) 0 (-) >0.05
rs59579878 chr1:53463759 SCP2 C - 13 T vs. C 0.067 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs79392928 chr1:53532006 PODN C - 13 A vs. T 0.033 (A) 0.208 (A) >1 (-) 0 (-) >0.05
rs111258468 chr1:53400625 SCP2 C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs141883000 chr1:53472781 SCP2 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs72903142 chr1:53494069 SCP2 C - 13 T vs. G 0.033 (G) 0.083 (G) <1 (-) 9 (-) >0.05
rs17107786 chr1:53525644 PODN [-2210bp] C - 13 T vs. C 0.033 (T) 0.083 (T) >1 (-) 0 (-) >0.05
rs11580093 chr1:53532609 PODN C - 13 T vs. C 0.033 (C) 0.033 (C) >1 (-) 0 (-) >0.05
rs7538935 chr1:53453714 SCP2 C - 13 T vs. G 0.025 (T) - <1 (-) 0 (-) >0.05
rs12562231 chr1:53470694 SCP2 C - 13 A vs. G 0.067 (A) 0.217 (A) <1 (-) 0 (-) >0.05
rs114672523 chr1:53374976 ECHDC2 C - 8 A vs. G - - >1 (-) 0 (-) >0.05
rs17107835 chr1:53536361 PODN C - 13 T vs. C 0.033 (T) 0.108 (T) <1 (-) 2 (-) >0.05
rs61599020 chr1:53463966 SCP2 C - 13 A vs. C 0.075 (C) 0.358 (C) <1 (-) 0 (-) >0.05
rs12563212 chr1:53470693 SCP2 C - 13 T vs. C 0.067 (C) 0.325 (C) >1 (-) 0 (-) >0.05
rs77816815 chr1:53414662 SCP2 C - 9 T vs. G - - >1 (-) 0 (-) >0.05
rs78339745 chr1:53531019 PODN C - 13 T vs. C - 0.267 (T) >1 (-) 0 (-) >0.05
rs725510 chr1:53526247 PODN [-1607bp] C - 13 T vs. C 0.092 (T) 0.4 (T) >1 (-) 9 (-) >0.05
rs114508051 chr1:53527069 PODN [-785bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs4288541 chr1:53449699 SCP2 C - 13 T vs. C 0.1 (C) 0.367 (C) >1 (-) 0 (-) >0.05
rs12061294 chr1:53413077 SCP2 C - 9 T vs. G - - >1 (-) 0 (-) >0.05
rs12070486 chr1:53412799 SCP2 C - 9 A vs. G - - <1 (-) 0 (-) >0.05
rs80057615 chr1:53345187 ZYG11A C - 12 A vs. G - - >1 (-) 22 (-) >0.05
rs147821352 chr1:53410566 SCP2 C - 9 A vs. G - - >1 (-) 0 (-) >0.05
rs11206047 chr1:53412213 SCP2 C - 9 T vs. G - - >1 (-) 0 (-) >0.05
rs116400784 chr1:53527033 PODN [-821bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs11206059 chr1:53449123 SCP2 C - 13 C vs. G 0.1 (G) 0.392 (G) >1 (-) 0 (-) >0.05
rs72899311 chr1:53430372 SCP2 C - 13 T vs. C 0.025 (T) 0.208 (T) >1 (-) 0 (-) >0.05
rs7528867 chr1:53453930 SCP2 C - 13 A vs. T 0.025 (T) - >1 (-) 0 (-) >0.05
rs34084497 chr1:53471114 SCP2 C - 13 C vs. G - - >1 (-) 0 (-) >0.05
rs72905175 chr1:53536261 PODN C - 13 T vs. C 0.033 (T) 0.108 (T) <1 (-) 23 (-) >0.05
rs59514126 chr1:53462728 SCP2 C - 13 T vs. C 0.025 (T) - <1 (-) 0 (-) >0.05
rs12064208 chr1:53464643 SCP2 C - 13 T vs. G 0.092 (G) 0.383 (G) <1 (-) 0 (-) >0.05
rs59604753 chr1:53492087 SCP2 C - 13 A vs. G - 0.033 (G) <1 (-) 0 (-) >0.05
rs7521090 chr1:53509793 SCP2 C - 13 T vs. C 0.092 (T) - <1 (-) 0 (-) >0.05
rs150809936 chr1:53432686 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs34624892 chr1:53454904 SCP2 C - 13 A vs. G 0.025 (A) 0.033 (A) <1 (-) 0 (-) >0.05
rs17107792 chr1:53530023 PODN C - 13 A vs. G 0.033 (A) 0.083 (A) <1 (-) 0 (-) >0.05

Association studies for this region [+]