SCP2, chr1:53392901-53517375 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2906770 chr1:53471432 SCP2 All: C 108,990 15 C vs. A - - 1.13 (1.07-1.20) 40 (0-68) 5.39e-05
Meta_image?name=rs2906770

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs111953571 chr1:53369342 ECHDC2 C - 12 T vs. C - - >1 (-) 15 (-) >0.05
rs111523744 chr1:53405288 SCP2 C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs12061212 chr1:53531693 PODN C - 13 C vs. G 0.033 (C) - <1 (-) 0 (-) >0.05
rs12077646 chr1:53463182 SCP2 C - 13 T vs. C 0.092 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs35392200 chr1:53471144 SCP2 C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs12081696 chr1:53531698 PODN C - 13 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs41294748 chr1:53536920 PODN C - 13 A vs. G 0.033 (A) 0.108 (A) <1 (-) 23 (-) >0.05
rs76991838 chr1:53523368 PODN [-4486bp] C - 12 A vs. T - - <1 (-) 0 (-) >0.05
rs79344942 chr1:53522735 PODN [-5119bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs6661057 chr1:53474157 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs57718860 chr1:53521638 SCP2 [+4263bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs11206067 chr1:53470386 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs11206061 chr1:53455899 SCP2 C - 13 T vs. C 0.025 (C) 0.025 (C) >1 (-) 0 (-) >0.05
rs11206065 chr1:53464390 SCP2 C - 13 C vs. G 0.092 (G) 0.383 (G) <1 (-) 0 (-) >0.05
rs78343210 chr1:53532881 PODN C - 13 T vs. G 0.033 (G) 0.25 (G) <1 (-) 0 (-) >0.05
rs62112416 chr1:53471110 SCP2 C - 13 C vs. G - - >1 (-) 33 (-) >0.05
rs113578739 chr1:53456397 SCP2 C - 13 C vs. G - - >1 (-) 0 (-) >0.05
rs11580449 chr1:53487353 SCP2 C - 13 C vs. G - - <1 (-) 0 (-) >0.05
rs11206064 chr1:53456764 SCP2 C - 13 A vs. G 0.025 (A) 0.033 (A) <1 (-) 0 (-) >0.05
rs7527327 chr1:53446736 SCP2 C - 13 T vs. C 0.025 (T) - >1 (-) 0 (-) >0.05
rs12059934 chr1:53525162 PODN [-2692bp] C - 13 A vs. G 0.092 (A) 0.4 (A) >1 (-) 3 (-) >0.05
rs17131748 chr1:53461443 SCP2 C - 13 T vs. C 0.092 (C) 0.383 (C) <1 (-) 0 (-) >0.05
rs79891639 chr1:53517863 SCP2 [+488bp] C - 13 A vs. C - 0.083 (A) >1 (-) 2 (-) >0.05
rs4926947 chr1:53523698 PODN [-4156bp] C - 13 C vs. G 0.025 (C) - >1 (-) 0 (-) >0.05
rs1383598 chr1:53528528 PODN C - 13 C vs. G 0.092 (C) 0.392 (C) >1 (-) 12 (-) >0.05
rs17107806 chr1:53532535 PODN C - 13 C vs. G 0.033 (C) 0.1 (C) >1 (-) 3 (-) >0.05
rs10437067 chr1:53530945 PODN C - 13 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs2657581 chr1:53471234 SCP2 C - 13 A vs. C - - <1 (-) 27 (-) >0.05
rs11577925 chr1:53542606 PODN C - 10 A vs. G - - <1 (-) 24 (-) >0.05
rs140993476 chr1:53396189 SCP2 C - 13 A vs. T - - >1 (-) 30 (-) >0.05
rs2275452 chr1:53535860 PODN C - 13 A vs. G 0.033 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs12565708 chr1:53528929 PODN C - 13 T vs. C 0.092 (T) 0.383 (T) >1 (-) 19 (-) >0.05
rs2275451 chr1:53535859 PODN C - 13 T vs. C - 0.25 (C) <1 (-) 0 (-) >0.05
rs61908147 chr1:53471272 SCP2 C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs7555228 chr1:53448403 SCP2 C - 13 C vs. G 0.092 (C) 0.383 (C) >1 (-) 0 (-) >0.05
rs11206071 chr1:53481814 SCP2 C - 13 T vs. G 0.092 (T) 0.4 (T) >1 (-) 0 (-) >0.05
rs11206070 chr1:53481759 SCP2 C - 13 C vs. G 0.092 (G) 0.4 (G) <1 (-) 0 (-) >0.05
rs10437069 chr1:53531278 PODN C - 13 C vs. G 0.033 (G) 0.033 (G) >1 (-) 0 (-) >0.05
rs12080172 chr1:53470377 SCP2 C - 13 C vs. G - - >1 (-) 0 (-) >0.05
rs6672557 chr1:53457205 SCP2 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs6695845 chr1:53456902 SCP2 C - 13 A vs. G 0.092 (A) 0.383 (A) >1 (-) 0 (-) >0.05
rs6672458 chr1:53457111 SCP2 C - 13 T vs. C 0.092 (T) - >1 (-) 0 (-) >0.05
rs78566762 chr1:53384662 ECHDC2 C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs7540227 chr1:53456268 SCP2 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs4926582 chr1:53451529 SCP2 C - 13 A vs. G 0.1 (A) 0.408 (A) <1 (-) 0 (-) >0.05
rs6664845 chr1:53514497 SCP2 C - 13 C vs. G 0.025 (G) - <1 (-) 0 (-) >0.05
rs11206077 chr1:53510129 SCP2 C - 13 A vs. G 0.025 (G) 0.033 (G) >1 (-) 0 (-) >0.05
rs1531701 chr1:53535222 PODN C - 13 A vs. G 0.033 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs11800691 chr1:53526787 PODN [-1067bp] C - 13 A vs. G 0.092 (A) 0.4 (A) >1 (-) 11 (-) >0.05
rs11584649 chr1:53530487 PODN C - 13 T vs. C 0.033 (T) 0.033 (T) <1 (-) 0 (-) >0.05

Association studies for this region [+]